result

Gene information

Detail information of AfisC4G03938

Location

Gene	Chr	Start	End	Strand
AfisC4G03938	chr4	740738758	740744122	-

Sequences

CDS

Protein

Gene

>AfisC4G03938
ATGGTACTTTGTTGAAAAACACACTTATTATTATTATTATTTTAAAAGAAACACCGTACTACGAAAAATAGAGCTAAGGAATTGGGTAGGTCCACCCCAACCAATCATCCATTTAACTCGCACTTTCGCATGTGTATTTTTCGATTTATTATTCATTTTAAAGAATTATTACATGTCTTCACAAATTATAAACTGCTAAAGTGTAGCTGGTTGGTCTTGAACTCTCTCATTCTGGTTGGAAGCTAGGAATCCCTACCAACTCCACTAAAGCTATGGACGGATTAAAATAAAATTTATGTTAATTTTAATATTGTAAACTAAACCTTTAAAATTTATAATAATAAAATTACATGTAAATAATTTAGATGGGTAAAAATACATAATTTTTGTAACTATAATTCAAGTTATTTTTTGCAAAAACATATAATGTCTTGTATGATGCGTTGTGAAAACGCAACGTATAATATAATAACTAAAATTTGCAAAACACATTAGTATGAACATTTTCTAATTCATAATGTTTGTCTTCATTTAACATGCTATTACTAATATAATATGTTTCGTTAAAGTGAACATATTCAAAAGTTTTCATTGTCTTGCACTGTTGAAGTGCAATGCAAAATGAAACCACTAAATTTAATATAAAAAAATTGCACTCTTTGAAACTTTATAGTTTATCATTAGACATCGTTTCATAATATATAATAAAAGAAGAGAGTAAATATTTATAAGAATAGATAAATTCAAGGGACATTTTCTAAAATATCCTTGAAATTTTTTAAAATTCACTTCTGCTGGAAAAAGGGTTTCACGAAATATCATATTAAAATATTTGACAAATATGTATTCTAAATTGTATATATTTGCATATAGAAGTGCAAAATTTTATTTTGCTAACAAAGCTAAAGCGATAAATATTTGCATTTAAACTATAAATATTTACAGTTTTACATGTATATGTATATGATTAGACTACATATTTTCATTGAAAATTTTTATAGAGTTTTTTCATGAAACTTGTTTTTAAAATGGCATTTTCAATGTTTGACAAAAAAATATCCAAGTTGTCTGCGGGTGCGGCACAGTGGAAATGAGGTTTGGGTTCTGATAAAAAGACCCATATTCGATTGCTACAATACGCTTCCCCATCCTAGATAAATATACCCGAATATATGGGGGTTTGGATCAGCGGACGGCTTTACCGTACCCACCTCATGAGTTTACCGGCCCGCTTAATTTCTCTGTAAATTTAAAACACAAAATTACTTTTAGGCCAACCATGCCTTTATTTTTTGCAAAAGTAAAAATGAATAGATTTCCACAGTAATTGTACTTCACTAATAATTCTAAACGTTATCCATTGCTTTTGTCGCAGGCCAACGTCTACTTGAAGTTTGTCATTGCATTGATGATGGTAGTATTCATGCATCTAATGTACCTCGTTATTATTTCTTGCAACGTCTATTTAATATAACGCATTGTTATGTTTCAACGTTATTATATGTAGTTTAAAATTTTAATTTACTTCTTTTATTTTTACAGTTGTAAGTTCATTTTTTTATTGCAATTATGGTTCGTTACTGTTATGTTTAACTTCAACAAAATGTAATGCATAATTTGAATTCAACGGAACTAAATTAAAGAAAAAAAAAACTAAGATCGAATTTAGCGTGAATAACACGAGGTTTAAAATTTAGTTCAAAGAACACTAAACGTTAAACTAATATACTATCAGATAAAACAACATTACTGATATATTAAACTAAAATTAAATGCTAAATTAAACTGGAATTGGATAAACTATATTAGATGAACTAAAATAATATTAACTTTTACAATTAAAGAAATGCCAAATTAATATATTACTACACATATATAATGACAAATTAATATATATATATATATAGAGGATGTGTTACAACTCATTTTCGCTAAATCTCAACTTTCCTTGTTTTCAACTAGATGTTCCCTCTTAGATTATTATAGCTTTCCTCTCGTATCACTTATATGATTATTTAAAGAGGAACATCTGATTGAAAAAAAAAAGAATTTGAGATATAGCAAAAACGAGGTATAACCGGTCTCAGTACACATATATTTTTGTTGGAATATATTGATTCAGTGTTTTATCAGCTGTAAAAGACGATACGTTAAGCTGTTAAACCCTTAAAGCCGAAGTAAACCATCCGTACATGTAAAGGCCCAACGGGCTAATGTCGGCAAAAAAACAAAAATAAGAACGCAAGTTGTGCTTTTATGGTTAGTGGCTGGTTGTCAGAAGCCAAATACAACCCCCCTGAACCTTCATCCATTCACAAAATCTTCAGTCAAATTCTCCGTGTGAAAGGCATCTTCAGCCATTTTTATTTTTCATCATTATACTTTTATGTTTAAGCACGTTTTGCCTTTTTCTTATCATACAATATATACATTTTTAATCATAGTGTAAATTAAATTCTATGGGTGTAATCTCAATCACATATCATATCATGTAAATCATTTTTGAAATCCATAATGCTATTAAAATAACGTGATGATGCCAAGGTTGTTAATTTTGTACGAATGTCCGATATTCGTTCGAGTCCGTGGTCGAAAAACGTACGTTTGAGCCCGTTCGATTTTCATTTAGAACATCAACCGGGACGAGAAAATTTGTACGAGCAAAAATCTTGTTCGATCCGGGTTCGTTAGAATTCGTCCGAATTTCTTATAATTCAGTATATCCATTATGTTTTTTTAAATATTTGTGACAACTGTTTGGTTGGTTGATTGAGTAAAAAATTCATAAACACTTATACTTCGGTACATATACTGATAAAAATAATATAGTGGATAGAAACTCTAAATGTGAAGTAAATAGCGATGTTCGTCCGTGTCTGTTCGAATCCATAGTCGAAAAATGTCCATCCATATTCGTCCAATTTTACTTAGGACATGCAATGGAACAACAAAATTTGTACGAGCATAAATCTTGTTCGGTCCATGTCCGACCCGATTTATTTACGACAGAAACTGAACACTTCTTCGTCCGGTCCAATTCGACCGATTTACTTTTTGTTACACGACACACAATTAGTGATTGAGATTACCATGAAATAGTGATATATTTGCATTTTTTTATCAAGTAAACTTTCATGATTGGTTACCACATATTGAATTCAACATAAATGGTAAAAAGAGTGCATTTTTATACATGTGGATAGAGGTTGACAAAGTAAATTGGTCTTCTCCCGGGCAAAAGTTGAATCCCAAGTAATAGTTAGAACCACTAGAGAAAAGGCGGCCAAAAGAACAACACGTTTGAAATTACTTCCTTACCTCTCTATATATAAACCTTTGCATGATAAGCCCATATCATCATCAACATTATCATAATATATACAGGACAAAGTGGCTAATCCAAAAGAAGACATGGAGACGAAAGAAGAAGCTTTAATGGCACCACTGTCTCCTTTAGTTCTGTCCCCTTACCATCAAAATCAAGAGTTAGAAGCAATGGTTTATGCATTGAGTCGGGTTGTTGCAGGAGATACTCATGACTCCACCTCTTCTTCTTCTTCAGGTCTCAAAAGAGAGAGAGATTGTCATGGCTATTCTGCAACTGAAGCTTCTTCTTCTTCTTCCCTTATTACAGGTATATATATATATATATATTCTCTTTTCTCATGCAAAACTATAGCAGAATTCATGTTTAATTCAACATTGCATGCATTTTTAGGAACTATTGAACATTATAATTTATAACATGCAGCACTAAATGCAGTCTTTTTCCTGTTTTTTTTTTACCACATTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCAAAAAATGGAAATTTGGCAGCTATTACATGCAAGTTTATGGATTTTTTATGCTGATTACAGATGAAGGTGTTGCCAGTGAATTCCATAGTTTACTTCTATTTTTTTTTCTGGTCATTTATCATACTTTTTCTTGTGCATCTTTTATTTTTTTTAAATGATGCATTTTTTATTTATTTAACTTTTGATATTGCACCTAATTTTCAAACATGCTACAAGTAGAAAATGCAACAAAATTGAACAAGTATAGTATAGAATAAAAAACATACTAGGATTCTTTACACATTCAAAATTTACATATTCAAATATGGAAACTTGGAATAGCTATTACATTCAAGTTTATTTTGGAAGTTTGATGCTGATTAGAGATGAAAATGTAGCCAGTCATTTATTCCATAATTTGCTTCTGATTTTTTTGTCATTTATCATGCCTTTTCTTCTGCATCTTTTTTATACTTTTAAAAACAATGATGCATTATTTATTTATTTAACTCTTGATATTGCATATTCCATGTATAATTTCAAAACATGCTACAAGTGGAAAATGCAACAAAATTGAACAAGTAATACAGAATAGAAAACATACTAGGATTCTATTTCTCTATACATTTAAAATGGTCCATATATTACTGCTTGGTTTCAAGTCAACGCTTTGAAAGTCAAAGAGAAGCTGCTTCAACTGACAGCAATTACTCTTCGTTTTCAGCTTCGAACACGAACATGAACAGAGCTGCAACGGCACCGGCACCCGAGCCCGAAACCCGAAAAAGATACCGAGGGGTGCGACAGCGGCCATGGGGGAAATGGGCGGCGGAGATACGGGACCCGCACAAGGCGACACGTGTCTGGCTGGGAACGTTTGAAACCGCGGAAGCCGCGGCGCGTGCGTACGATCAAGCTGCCTTGAGGTTTAGAGGAAACCGGGCGAAGCTCAACTTTCCGGAGAATGTTCGGCTCCGGGTTCAGGATCCGAATCCGAATGTTGGCAATGACGCGAGTTTGAGTGTGAGTGTGAGCTCGAGTTCGAGTTCGAGCCCTTTGTTTTACTCGGAGAGTGCGGATGTCGGTCGGAGTCGGAGCGGCGAGCCGCAGTTTGATCCGGATGGTAGTTCGTGGATGGACTTGAGTCGGTTTCAGGGGTCTTCTGGTTGAGGTTTCGATATTTAGGGGTGTTTGGGTAATTGTGTTGATTTTTGCATTTGAATTTTGATGATGTATGAAGTTGGTTTTGCTTGTTGAAGTAGTTCGTATGGGTGGAGAGGCCTTGCAGTTTCAAATTCAGAACTTTAGATATGGTTTGTTCAGTTTAAAAGACATGTAACTGATTCTTACTGTAAACTAGCCTATAGAAGTAGTTATTGAGATTGTTAAAGAGATTGCCGTTATAATGCATTGTGATTTAAATTAAAGCTGCAATCTCTTTGCCGTTTTAATACAACGATCAAAATGATTACCGTTTTAAGCCGCTGCAATGTCCATTTTGAACAACTAGTTATCTCCTCCCTTGT

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3961351.1	7.5e-25	hypothetical protein CMV_014029
Swissprot	Q7G1L2.2	5.0e-26	Protein RELATED TO APETALA2 6
trEMBL	A0A834LAD4	5.4e-25	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G43160.1	58.14	1e-27	120	RAP2.6	related to AP2 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03938	AT5G61890.1	138	53	2	47	181	31	151	47.10	6e-28	120
AfisC4G03938	AT1G43160.1	129	44	2	52	179	1	120	58.14	1e-27	120
AfisC4G03938	AT2G33710.2	65	16	0	117	181	67	131	75.38	2e-26	116

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC4G03938
Allium sativum	Asa5G03442.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	119	168	52.3	4.6e-14

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009749	P	response to glucose
GO:0009751	P	response to salicylic acid
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0043565	F	sequence-specific DNA binding
GO:0051301	P	cell division
GO:0070483	P	detection of hypoxia
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network