result

Gene information

Detail information of AfisC4G03950

Location

Gene	Chr	Start	End	Strand
AfisC4G03950	chr4	742622684	742627584	-

Sequences

CDS

>AfisC4G03950
ATGACTGACAGCATGATGGACAGAGAGTTATTCAAGGCGATCGTCGCCGGCGACTCATCCCTCCCCGACGTCGGGGACTACGTCTACTACTTTCCGAAAGGGCACGCTGACTCGACATTTTCCGCCGCCGGTCTCTTCTCTGACCAAATCAAGCAATCCCATGCCCTTTGCCTGATCACTAACGTCAAATACCTTGCCGACGAACACTCAGACGAGCTTTATGCAAAATTCACGCTCGTTCCGAACCCTAGCCCTCGTCTCGCGCTGATGTCCAACAGTATCAGAGAATGTGCAAATCGTTTCAAACGTGTTAATCCGATACCCTTCGCCAAGATTCTTACACGCAGCGACGCGACCAACGGAGGAGGGTTTTCCGTTCCGAAATTCTGCGCGGACACAGTTTATCCGCCACTCGATGACAGTCTTACACCCCCTAAGCAGATTTTGGAGATGGAGGATATGCAAGGGAAAAAGTGGTCGTTTCGGCACGTTTATCGCGGATCTCCCTTGAGGCATTTGTTGACCACGCAATGGAGCAAGTTCTGCGATGCCAAGCTTCTGTGCAAAGACGATACGGTTGTGTTCGTGAATCGAGAAGGGAAATTGTACATTGGGATCAGGAGGGCTAGGGCGAATTTGAATGCGGAAGGGGGAACTGAGAAATTAGGGGTTGCTGAGGTTTCGAATAGAGGTGTTAGATTTGGGAAGGTGAAAGAAGAGGAGGTGGTGGAGGCGGTTAGGGCAATGGAGAAAGGAGAGAGTTTCGAGGTTAGTTACTATCCGAGGGTTGGGGGTGTTAAGTGCATAATTGGGAAGGAGGTGGTTGAGGATAGTTTGAGGGTTGAGTGGAAGAAAGGGATGAGGATTAGTATGGATGTGCAGAAGATGGTGACTGGCGAGGTGGTGTGTTTTAAGGGTCGGGTTGTGGATGTTCTTATCAGTACTTCGGCTTCATATTGGAAGACGATTCAGGTAAGTTTCGATGAACCCAGCGCACTGCATCATGTGAAATCCACAGCAGTCAGTCCATGGGAAATCAAACCCATACCCACACTACAACATGTGAAATCCACAGCAGTTAGTCCATGGGAAATCAATCCCATACCCACAACCAAGCGACCCAGATCAGAATTCGATTTCTTCGCCCAAGACATCAAGACCCTTGCCTGTAACCCATACACATATCTAAATTATTTCCCTACAGTTTTTCCTGCTTGCATGCAGGGAGCCAGGCAAACTTGTACCTATGCAAGCTTCTTATCTACTCCTAAGGCAGAGCCGAACACAACAATGTCTAACCTCACCACTCAAAATAATAGCTCTGACCAATTTCCAGCTGCAGCGGTAGTTCCTGGCAAAAAAACTAGAAAGGTAGTTAAGCTTTTTGGTGAGGTCATAAGCAGTGGCGATCAGACCGAGGATATAGAATCTTATTCTTCTGCACCCTCTGTTTCTGGTACCCGTGATGTTGTCGCTTCAGATGCTCCATTTCCATTCAGAGGTATTGCGTAG

Protein

Gene

>AfisC4G03950
AAACCCCGTAATCCAAGCATGACTGACAGCATGATGGACAGAGAGTTATTCAAGGCGATCGTCGCCGGCGACTCATCCCTCCCCGACGTCGGGGACTACGTCTACTACTTTCCGAAAGGGCACGCTGACTCGACATTTTCCGCCGCCGGTCTCTTCTCTGACCAAATCAAGCAATCCCATGCCCTTTGCCTGATCACTAACGTCAAATACCTTGCCGACGAACACTCAGACGAGCTTTATGCAAAATTCACGCTCGTTCCGAACCCTAGCCCTCGTCTCGCGCTGATGTCCAACAGTATCAGAGAATGTGCAAATCGTTTCAAACGTGTTAATCCGATACCCTTCGCCAAGATTCTTACACGCAGCGACGCGACCAACGGAGGAGGGTTTTCCGTTCCGAAATTCTGCGCGGACACAGTTTATCCGCCACTCGATGACAGTCTTACACCCCCTAAGCAGATTTTGGAGATGGAGGATATGCAAGGGAAAAAGTGGTCGTTTCGGCACGTTTATCGCGGATCTCCCTTGAGGCATTTGTTGACCACGCAATGGAGCAAGTTCTGCGATGCCAAGCTTCTGTGCAAAGACGATACGGTTGTGTTCGTGAATCGAGAAGGGAAATTGTACATTGGGATCAGGAGGGCTAGGGCGAATTTGAATGCGGAAGGGGGAACTGAGAAATTAGGGGTTGCTGAGGTTTCGAATAGAGGTGTTAGATTTGGGAAGGTGAAAGAAGAGGAGGTGGTGGAGGCGGTTAGGGCAATGGAGAAAGGAGAGAGTTTCGAGGTTAGTTACTATCCGAGGGTTGGGGGTGTTAAGTGCATAATTGGGAAGGAGGTGGTTGAGGATAGTTTGAGGGTTGAGTGGAAGAAAGGGATGAGGATTAGTATGGATGTGCAGAAGATGGTGACTGGCGAGGTGGTGTGTTTTAAGGGTCGGGTTGTGGATGTTCTTATCAGTACTTCGGCTTCATATTGGAAGACGATTCAGGTATGATCACTGTTCTAATTCTTCGTGCTGTTTATATTTGTTCAGTTGCAACCGGAGAAATAAAAAAAATCAGAATTTAGTAGGAGTCTTACCACTTAAGGAATTGCTGAATGCTGAATGTGGTTGAAACAATAATTTTAATAATGTCTATTCAATGATTTATGCTAAAAAATTTCTTTTTGTCATAAGACGTTAAGCCGGTATAAAATTTTGGTTATCGAATAAATACACTTGAAAACGACCTTCAATAAAAAAATACCATTTTTTTTCTTTTAGCAAATGTGACAGTGGTGACATAAGGATTGGGTTAGGGCAATTGATATGGTCAAATTATGTTTAGGAAGTAAATTGGAATAGTACTTTATTTCGTTACAGATAAATTGGTGTAGTTGCTTAGGTTGGTGATGATTTTGAAGGTGTGTTTAATGTTTGATATACGTAATGATGAAGCTTTATTCTTTCATGACATGTCATTATATTTACATATAGAATTTTAGTCTGTCATTTCAAGGCAAATTAAGTTATGTTCTTAAGTGATTGTATACAATTAGTTTTTTATAGTACTAGTTTATATTTTTGTTGAAGGAAAATTAGGATAATGTATAAGAATTCTTACATTAGAATAGGATTACTTTTAATAGGACTTATTCAAACTTTTCACTTTTTCTTCAAACACTGTATATAGTGTCTCTCTCTCTCTATACACAAAGAGAGAGATGGAGAAACCTTGCTTCTGTACTTTTTAACATTTTATTTTTATTTTTATTTTTATTTTTATTAATAATAGTACATACATTAAGGTGACAGAGCAACATTAAATATACAGGGAAAAACAGATTACTAATCATTGATAAGCTTAGAGATGTATAAAAAGGAATTAGACATATGACGCATGTAATGAACAACTTCAATGAAAACAATCTGTGAAGTGAAAAGATACTTGATAAGTATTCAATGAGCTAGGAAAAATATCTTACTGCTAATCCCATTCCTTCCTTTTTGGGAAAACATTGCTGATCAGATGAGCTAAAACATTTTTATGAAACATGTAAAGGTGCATAATATAATATAGACATGGATAATTTAATCTTTTTCTATCAAAACAGTTTCAATTGATTTTGGGTTTATTAATCAAGGGTAATGAATTTTATTGTAAAAGCATTTTAACAATTTCGTAAATTAGGACAGCAGCTAATCATCACCTAACCAACACCATTCCTACCAAAATATCTACTTAAAGTTATCATCAGTATGCATGTTCTTTACTGCAGTTGGTAATATGTTGCCCATTGATTTGAAAATCATGCATATTTTGCACTGCGGTTTTGATCATTGCTTCGTGTATTTCAATAGTTGCGTTTTGTAAAATTCCAGATAAGTACATCATATCATTATTGCTTTCAAAGCCCGAAGGCATATAAATACCACAAAAACTTCATGGTAGCCACAGATAGAATGAAATATTCAAAATATACTCACCTTAAACTGACTGAATTGATAATTCGGCATCAATAACCTTGACGATGCTAACCTCCATAGATATTTGAATTTCAGTCTCTTAATTCCTTGAATTTCTCTTGCTTTAAGTTATTTCTAATACGTACTTGAACTTTATTTATTTATTTGTCAGTAGAAGTAGGATCACGTAGAAGAAGGCAACTAATACTCGTTCAAAGTTTCCTTTTAAAGGTCGGGCTCTGTACTTTCCTACGAAACTTCCTTTTAAAATAAAACCCAAATTTCTACGAATATATTTTCATCTTGTACTTTTTTTTTCCTTTCATCAATTCCGTACACAAAACTTTTCGAAAAATTTGCATTCTTTTTGATAATTTTCATCTGTTTCACAAGCATATAATTTTCTATGTAAAAGTTTTGCTTGTATACTTTTTTTTTCTTTTTTCTCTGTTTGGTGTTTCAAAATCTCTGATCATTAAAACTTAATTTAAATGAGTGTATGCAGTAGCATTCTGTTACTAAGCATAGAGATTTATAGAACAAATTCAGATAAAAGACCTATGCAATGAAATAAGTGTAATGTATCAATTTCTGAAGTTAAATGGATTTGTTCAGTTTGCAGTAATGAATCGGAAAAATGTGACCTACTGCATGAAAATTTTGCTTAAGAGATTTGAACCCTCTCTTCCCAGCTGGGGAAAACATTGCTTACCTTATGAACTACACCAGTACCATGATATATATGTAGAACTGAACATTCAAATATCTAATTGTTGACACGTAGTAATGTAGGCCCTTGCTAAAAATAGCCAATGAGCAGTTGTTCCACCCTGACCCAATGTAAAATGTAATCTTCTAATTGATTGAGTGATTAATCTCTCTGTTTTTTTACCAAAGTAATTCTAAATAAGGATTGTTAAAATGGACTCCGTATTTGGATACCATCCAAAATAAAATTATTAAAGGGAGGGCATGAGGCCGCGGGCTCTAACCTGAACAATTTTCCATTTTATTGTCATTAAACAATTTTCCATTTTACATATCGATATATTACGTAATTATGTTTTTTTTATTGAGGGACTGATTTTTAATAGATATGTAAACGTATAATTTCATATATGGATGGTGTCCGCATTCGTATTTGAAATTATTTTGTAATATTGAAAACAATCCGCAGATACGGACGAATATTAGATATTTATCCGCTCGGCTCATAACTAGTAACGTAAAAAAAGTAGAAAATTTTTGATCTAAGATAAGCCTTTTTAATACTAATGCTAATAAAAATATAAGAAATATAAAATTTGCTGATAATAATCACTTTGGGTAACAAATATTCATTTATACACTCATAATATAATCTATTAACTTGATAAAACGGTAAATATCAATCATTATATGTAGTAAATATGCATAATTTTAAAGCAAATACTATCATATTTTCTTATCCATTTCTTGGGTTTTGGTTTTTTTTATAAATTTTTGTCAGATACAAACATATTTAGAATTTTTCGGGCATCAATTTACAACTCTTATGTTTTTTAGTGCTTCCCATCAAAATACTAAGAAAATAATCTTTCTTATCCAAAACTAAAAGTACATCTAAACATTCCCCTTCTAAACCCTTTTGTTTTTGTTTGTTCATGTTGTTTTCTGCAATGGTGTTTGCAAAATATTAAGTTAGGTAATTAAAAATTTCGTCTCTAATCAACATTTTTTTATATACATAGTTTAACTTGGCTATAATATATGACCAAGGGGCCAAACTAGATCTTACCACCATAATCACTGATCTTTACCAATCAACAACCTTACAATATGTTTGACATAGACTGACCCTAAATAAATCATTTCTTGCTATATATTGGGTTTCATTTTTGCTAAATATTGTATTTTCCTTCAAAATTTATCAGGTAAGTTTCGATGAACCCAGCGCACTGCATCATGTGAAATCCACAGCAGTCAGTCCATGGGAAATCAAACCCATACCCACACTACAACATGTGAAATCCACAGCAGTTAGTCCATGGGAAATCAATCCCATACCCACAACCAAGCGACCCAGATCAGAATTCGATTTCTTCGCCCAAGACATCAAGACCCTTGCCTGTAACCCATACACATATCTAAATTATTTCCCTACAGTTTTTCCTGCTTGCATGCAGGGAGCCAGGCAAACTTGTACCTATGCAAGCTTCTTATCTACTCCTAAGGCAGAGCCGAACACAACAATGTCTAACCTCACCACTCAAAATAATAGCTCTGACCAATTTCCAGCTGCAGCGGTAGTTCCTGGCAAAAAAACTAGAAAGGTAGTTAAGCTTTTTGGTGAGGTCATAAGCAGTGGCGATCAGACCGAGGATATAGAATCTTATTCTTCTGCACCCTCTGTTTCTGGTACCCGTGATGTTGTCGCTTCAGATGCTCCATTTCCATTCAGAGGTATTGCGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	MQL71716.1	1.2e-64	hypothetical protein
Swissprot	Q6K223.1	8.4e-60	Auxin response factor 8
trEMBL	A0A7I8KT76	2.2e-65	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G30080.1	32.89	1e-58	224	ARF16	auxin response factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03950	AT4G30080.1	456	264	13	2	422	12	460	32.89	1e-58	224
AfisC4G03950	AT2G28350.1	451	251	10	6	412	7	450	33.04	2e-56	217
AfisC4G03950	AT1G77850.1	451	244	11	6	412	16	446	31.71	1e-55	214

Ortholog group

Species	Genes
Allium cepa	g245982.t1
Allium fistulosum	AfisC4G03950
Allium sativum	Asa5G03443.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	109	209	63.2	1.5e-17
PF06507.10	Auxin_resp	Family	245	321	34.6	1.5e-08

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009653	P	anatomical structure morphogenesis
GO:0009555	P	pollen development
GO:0009733	P	response to auxin
GO:0009755	P	hormone-mediated signaling pathway
GO:0009889	P	regulation of biosynthetic process
GO:0044763	P	single-organism cellular process
GO:0045229	P	external encapsulating structure organization
GO:0048364	P	root development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048827	P	phyllome development
GO:0080090	P	regulation of primary metabolic process
GO:1901576	P	organic substance biosynthetic process
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network