Detail information of AfisC4G04029
| Gene | Chr | Start | End | Strand |
|---|---|---|---|---|
| AfisC4G04029 | chr4 | 756761206 | 756791150 | + |
| CDS |
| Protein |
| Gene |
| Database | accession number | e-value | annotation |
|---|---|---|---|
| nr | XP_020259989.1 | 0.0e+00 | LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 20 |
| Swissprot | F4HW51.2 | 0.0e+00 | X-linked helicase II |
| trEMBL | A0A6I9R1P0 | 0.0e+00 | ATP-dependent helicase ATRX |
| TAIR id | % identity | e-value | bit score | gene aliases | Short description |
|---|---|---|---|---|---|
| AT1G08600.2 | 52.33 | 0.0 | 1399 | ATRX;CHR20 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Species | Genes |
|---|---|
| Allium cepa | g129764.t1 |
| Allium fistulosum | AfisC4G04029 |
| Allium sativum | Asa5G03505.1 |
| Arabidopsis thaliana | AT1G08600.1; AT1G08600.2; AT1G08600.3; AT1G08600.4 |
| Oryza sativa | LOC_Os10g31970.1 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|---|---|---|---|---|---|
| PF00176.20 | SNF2_N | Family | 760 | 1057 | 167.2 | 3.6e-49 |
| PF00271.28 | Helicase_C | Family | 1148 | 1273 | 57.0 | 1.9e-15 |
| Accession | Ontology | Name |
|---|---|---|
| GO:0000166 | F | nucleotide binding |
| GO:0000724 | P | double-strand break repair via homologous recombination |
| GO:0003006 | P | developmental process involved in reproduction |
| GO:0004386 | F | helicase activity |
| GO:0006336 | P | DNA replication-independent nucleosome assembly |
| GO:0006338 | P | chromatin remodeling |
| GO:0007275 | P | multicellular organism development |
| GO:0007276 | P | gamete generation |
| GO:0010212 | P | response to ionizing radiation |
| GO:0015616 | F | DNA translocase activity |
| GO:0016604 | C | nuclear body |
| GO:0035064 | F | methylated histone binding |
| GO:0042221 | P | response to chemical |
| GO:0043167 | F | ion binding |
| GO:0048468 | P | cell development |
| GO:0051054 | P | positive regulation of DNA metabolic process |
| GO:0070087 | F | chromo shadow domain binding |
| GO:0070603 | C | SWI/SNF superfamily-type complex |
| GO:0098687 | C | chromosomal region |
| GO:1901582 | P | positive regulation of telomeric RNA transcription from RNA pol II promoter |
| GO:1904908 | P | negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric |
| GO:1990707 | C | nuclear subtelomeric heterochromatin |
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K10779 | ATRX; transcriptional regulator ATRX | EC:3.6.4.12 | - | - |