result

Gene information

Detail information of AfisC4G04042

Location

Gene	Chr	Start	End	Strand
AfisC4G04042	chr4	758699459	758702438	+

Sequences

CDS

Protein

Gene

>AfisC4G04042
ATGCCAATGAAGTTCTTAAGTTATGCTAAGATCAATCTATACAATTCTGATAATGAGAAATCAGTCGTAAACAGCGAGTTCAGCTGTAATAATATCCCTCTATCCTCTATAGTTACAGCAAGCACCAAGAGACATACTGTACAGGTACACATAATTAATAATAACAATAATAATTCTTTCTTCTTATAATAAATTTGTCAGCTTTTGTGTTATCCAGAAACAGGAGAGTTCAAAAGGCACTTGCAAGAAGCCGAAGAAAGGACCATCTTCTTCTTCCATTGGGACGATCATGGTACAAATGAGAAGTTGTTGAAATCTGCTTATTTTTCCAACTTTTAATTACTTTTTAATCTGAAGTTTAACGATGATAATTAATAGATTCGAAAGCAGAAACTAGGTGATAGAATCGCAACGTTGCAACAGCTAGTTTCACCTTTTGGCAAGGTCTCATTCTTCGTTTTTCCAAATTGTCAAACATTTGATAATCATATTTCTGTGATAATTTAGACGGTGGATTTACTTAGAATGCATTGTGTTTGCAGTTAGATACAGCTTCAGTGTTATAGGAAACATTAGAATATATTCGGTTCTTGCAAGACCAAATTCAGGTATCAATCAATGTGTACAATGATCTACTTACTTTAACATGTTCGTTTTTATATCGTAAATATTTGACTATAACATTATGCTTTTGGATGAATTACAGTATGCGGCTAAGAGGAAAGATGGATCAGGAAACAACGATCTAAGGTTACGAGGGTTGTGTATTGTACCAGTATCATGCATCAAAGAAGTTGAAAGTGAAGATGATGTTGCTGCTTATTCATGTCGATACTGGTACAATACACAACCCTCGTTGACCAGTTACAAGGGCCAGTTTGCGTCAGAAGAATACATCTACATGTCGATATTGGACAGAACCTTAACACGGATACAAAGCTTCCCACAGGTAAAAAAATAATAGCTTTTCCATCATGTGAGCAAATTGAAGGGCTTTCACCAAGTTTTGAATCGGCTAAGCTCGGAAACTTTCACATGATGATAAATTCGATTTTAAGCCACGTCAAAAATTATAAAGCTTCGGCAGAACGTAAAATCATTCTAGTGCTTCCGTAAATTCTGTTAATTTCATGCTTCGTTATCAGCATCTTAAGTTCTTGTAACGTACTCGTAGTGCAAACATCAAATTCTTGGTTCACATATTCTTACTCAGTTTACAGACATCATTTGCGAACGTTTCTTATCATGAAGTTTAAAATCAAAAGACCTCAGCAGCAGTGACCAAGACCAGTATCGACGAAATATCATGTTCAAAGTGTCCCGTTTAAAAGACCGAAAATACATACTCACACATCACAGTACACAATTTAACAGATATATACACAAAGCATCCTCCGCATATATAACCGAAAATCTCCTGACCAAACTAAAACCCAATTTGAAGTTCACCTTCCTTCCTATTTGGATATAAAAGACTTACAATTGAGGTTAGCTTGTTTTTTCCCTTCCCTTTTTTGTCTTTCTTTCATGATGTTCATCCTAATACGGTTTTGGATTTCTTGTGAAAAGAACACATGAACTTTCTCCCATGTTCCCAAACACCATGCATTGAATATTCACCGTAGTCCCTTTCAAACCTGTAATTTTATTTATGCTTCTGTACTTTTATAGCCTTTGGACTGTCCCATGAGTCGAATACTGCTGTCACTGCTAAGTACAACTGCCCTTTTGGGTCTGCCATAAACAGGGATTTATATTTAATGGTGCTTAACAAAGAAGTGAAGGAGAAAATACAAGAAGCAGTGAACTCGAACAAACTGAAAAGCAAAGCAGGAATATGGTAAGTTGTCTACTTGTTGTAATCATCAACATTTTTTTAAATAGGAAGTCTTGATTTATTCCCCTTTTTAGTATTGCAGGTCTTAACATTTCTTTTGCTCCTCTCTTAATAATTATCAGGAATAGAGCCCTGGACATTTGAGCAACATCTTGGCGAAGCAGTTTTTATTCCAGCAGGATGCCCTCATCAAGTAACAAATAGAAAGGTTAGTGTTCTCTATACTCTATTATTGATTGATATAAAGGATTTTAGCAACGGTGTAATGAATTCATATTTTTGTTATTTTTTTTTATCATAATTATACATCAGATTATTTTGCTTTTTATTTAAGATGGTACATTTATTGATTTTCTTAGATATTATAGGATGTTTATACTGTACTTTATATAAATAATTTGATCTATTTGTCTCAACTGATGATTTTCACCCTTGATAAATTTGAGAGACTTACAGGAGAAAAACTAGATAGTCTCAAACCAAAGAAAAATAACTAGAAACTAATTTCATTTAATCCTAGAAAAATGTCACTAAAAATATAAGTATAGTCATTATATATGTATTCAATTATACAATATTTTTCTCATTTTTCCTTTTGAGTGGTAGCGTGTGTGTGTGTGTGTGTAAAATCTCTGTGTGTGTGTATTCAGTTATGAGTCTAAACTTTTGTTATTGTAATTTTTCAGTCTTGCATTAGAGTAGCCATGGACTTTGTTTCTCCCGAGAGTATCATTCAATGTGTCAGTTTAACTGAAGAGTTTCGACTGCTTCCAAAAACTCATAGGTCAAAGGAAGACAAATTAGAGGTACATATTGTTTTCAGTTAATGTATTTAGAAAAAAAAGAAAAGAAAATCATTTCTCGCTTAAGTTAGCAACTTCATCTGCATTTCTCTCTGTGATCATGTATACTTATGAACTAAAGATCTTATTATTTTTCTTGGTTTATAACTCTATGCCCGGATTAGTTAGCTTCACATGATGTAGAAACTGACCTGACAGCTGTTCCATATTTTGTATGCAGGTAAAGAAAATGTCTGTATATTCCATGCAAGAAGCTGTGAAAGAAGCTAAAAAATTGATATCCTCTATCAGGTCAGACTGGTGTATTTACAAGTTACTGAACAATGCTTCTGTCAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_023909239.1	1.6e-34	lysine-specific demethylase JMJ25-like
Swissprot	Q9SSE9.1	6.4e-25	Protein JUMONJI 25
trEMBL	A0A8J4QK03	1.1e-34	WRC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00990.1	67.01	2e-34	143		Transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04042	AT4G00990.1	97	31	1	174	269	743	839	67.01	2e-34	143
AfisC4G04042	AT1G11950.1	92	32	0	172	263	780	871	65.22	4e-33	138
AfisC4G04042	AT1G62310.1	78	24	0	172	249	806	883	69.23	9e-28	120

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02373.19	JmjC	Domain	174	212	42.4	7.1e-11

Gene Ontology

Accession	Ontology	Name
GO:0000785	C	chromatin
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005654	C	nucleoplasm
GO:0055114	P	oxidation-reduction process
GO:0008168	F	methyltransferase activity
GO:0009555	P	pollen development
GO:0009908	P	flower development
GO:0031490	F	chromatin DNA binding
GO:0032454	F	histone demethylase activity (H3-K9 specific)
GO:0032776	P	DNA methylation on cytosine
GO:0033169	P	histone H3-K9 demethylation
GO:0048366	P	leaf development
GO:0051213	F	dioxygenase activity
GO:0060969	P	negative regulation of gene silencing
GO:0070919	P	production of siRNA involved in chromatin silencing by small RNA
GO:0080188	P	RNA-directed DNA methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network