result

Gene information

Detail information of AfisC4G04139

Location

Gene	Chr	Start	End	Strand
AfisC4G04139	chr4	780615168	780615533	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_027902521.1	2.6e-31	transcription factor MYB73-like
Swissprot	Q9SN12.1	5.2e-32	Myb-related protein R2
trEMBL	A0A804IHQ8	1.9e-31	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G50060.1	63.37	8e-35	141	MYB77	myb domain protein 77

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04139	AT3G50060.1	101	37	16	116	6	106	63.37	8e-35	141
AfisC4G04139	AT5G67300.1	103	40	16	118	6	108	61.17	1e-33	138
AfisC4G04139	AT2G23290.1	101	39	16	116	13	113	61.39	6e-33	135

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	16	62	58.9	3.5e-16
PF00249.28	Myb_DNA-binding	Domain	69	112	46.9	2.1e-12

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0006338	P	chromatin remodeling
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010200	P	response to chitin
GO:0016363	C	nuclear matrix
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048527	P	lateral root development
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:1901347	P	negative regulation of secondary cell wall biogenesis
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network