Gene information

Detail information of AfisC4G04140

Location

Gene	Chr	Start	End	Strand
AfisC4G04140	chr4	780872832	780873510	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	MQM22714.1	8.7e-34	hypothetical protein
Swissprot	Q9SN12.1	3.6e-32	Myb-related protein R2
trEMBL	A0A1D1YV79	6.7e-36	Transcription factor MYB44

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G50060.1	62.38	2e-34	142	MYB77	myb domain protein 77

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04140	AT3G50060.1	101	38	0	16	116	6	106	62.38	2e-34	142
AfisC4G04140	AT5G67300.1	145	68	2	16	153	6	150	48.28	2e-33	138
AfisC4G04140	AT4G37260.1	101	41	0	16	116	13	113	59.41	1e-32	135

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	19	77	54.7	8.2e-15

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0006338	P	chromatin remodeling
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010200	P	response to chitin
GO:0016363	C	nuclear matrix
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048527	P	lateral root development
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network