result

Gene information

Detail information of AfisC4G04321

Location

Gene	Chr	Start	End	Strand
AfisC4G04321	chr4	831575008	831577044	-

Sequences

CDS

Protein

Gene

>AfisC4G04321
ATGTTGGGGACCACGCGGGAGGTGCTGCGGATTCGGCCCGTTACGGATGTAGGCCCCACCAGCAAGGCACTGCGGGATGCTGCCACGTACGACTGGGCAAGGAGTGGGTGGGACTTCGGGGACTGGGGAGAAATTTTCGGATAGGACATGGCGTGGGTCTACGGAAGGACGGAAGAGAGGTGGGTCGATGAAGTTGTTTATTATCACGTCAAATGCCTTGCTTATTTTTAAAATTTTGAAGTTGACAGTTAATAACGCTAGATTTGTGTAATAATTGTAGATAGGATTTAATTTCCTTTTTCGTGACTTACTTTAGATATTCGTACATTGATTTCAAACTTGTAGCACATGGGATGTTTAATTAGGACAGATGAGCTGGTGAGAAAAGAGATATTGTTAGTACTTAGCATTTGCGTTTTGATTGTGTGCGAAATTGAACTTTACAAAATTCTGCTATTCATATGTTTTAAGATCGATTAATTCATCCAGAGATTTTACTTTATTTTGAATCTTGCTTTGCTCCTTTGTCTTGTAATATGAGAATTTGAGTTTGAACTTGGATGCTGTTTGACTGACTGCACCCATGTTTGACTGACTGCACCCATGGATGCTATTCATCCAGAGATTTTACTTTATTCCGTACCTGATGTTATCTTGATCATGAAATTCTTCTTTCAGTTTCATGCAAATTTGATGCTTACAATTTACATTCAGAGGAAGGAAAAAGGTTGTTGCTGGATTGGAATACACGATACCACATCATTACTGGGATTGCTCGAGGTCTTCTCTATCTTCACCAAGATTCCAGATTTAGAATCAGATGTATTTAGTTTCGGTGTGTTGGTTCTAGAAATTATAAGTGGAAAAAGAACAGAGTTTATGCAGAACCGCCTCATATTAATCTACTTGCCCATGTAAGTTTTCAATATTTCATCTTTCATTGCATGTCATAGCATTATGCCTACATTTTAGTGTGTTTGGAGCGCGTGCGCACACACATATGTGTGTGTACGAGGATAACTAGAAGTTTCATATCCAAGAACTTTGACAACACAACTAAATTCTTTTTAAGTAAATATTTGCAATTGATGTCCATACTCTACAGATCTTTGAATCAAGATTCCAAATGTCTTGCAACTGTTCTAGTGATATTTGACATTTTTAAAATTGATAAATGATGTCCAAAGGATCCATAGTCTAAAACTGTAGCACTTTGTTAGTGTTCCTTGGTGCACAACCAAATATCTTACCATTATTACCTTGTTTCATGAACACAATGCATAATTTTCTATTTCAAATATTTTCTGATCAAATAGGCATGGAGTTTATGGAAAGAAGGAAATGACATGCAATTAGTGGATGATTCAATGGGCGACTCCTTTTCAAGTGATGAAGTTCTAAGGTGTATAAAACTTGGGTTATTATGTGTACAAGAGCATCCAGAAGATAGGCCTCTAATGTCATCAATAGTACAAATGTTCAGTGGTGATATAAAGACAATACCACAGCCGAAGCAACCTGGTTTCACAGGAAGGATTCATCCTCCTGAAGTGGACTTATCCAGCAATCATGATTTTTGTTCTAATGAACTGAGTATGACAGTGATTGAACCAAGATAGCTGGTTAATGACTTTATATAGAATCTTCATCCTCAGATTTTGGTGGACATAGTTCTGGCTAATAATGTGCTGAGAACTTTTGGTAGTCACATTTCGCTTCCTGAAGAAAGCTATAATAAAAGCATGATGCACCCTAGAGTAGCTGAGTGTGCATTGTATATTTCCGGTCAGCAAAGTAATACCAAACGAATACGTACTCTGACAATTAAAAAAGGAAGGAGTGAGTAAATTACAATGCATTTTGCCTTGTAGCAATGCCCTTTAATAATGGGTCCAGTAAGATTTGTATGTAGTCATATCCAGTTTGAATAGAATGGATGTATAGTAAATTTATAGTGTCTACGTTTCTACTCATTGTAAATGTTTGTGAAATGCCAAGTATCACATTTGCGTAACATTTGCTTGATTGTTATTTGTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256477.1	1.7e-38	receptor-like serine/threonine-protein kinase SD1-8
Swissprot	Q39086.1	2.0e-23	S-domain-1 (SD1) receptor kinase 7
trEMBL	A0A5P1F8I1	1.2e-38	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G65790.1	44.44	1e-24	108	ARK1;RK1	receptor kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04321	AT1G65790.1	126	61	4	41	157	718	843	44.44	1e-24	108
AfisC4G04321	AT1G65800.1	126	64	5	41	157	722	847	42.06	2e-21	98.2
AfisC4G04321	AT4G23270.1	110	52	4	53	157	539	645	45.45	2e-20	95.1

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC4G04321
Allium sativum	Asa4G06603.1; Asa7G07589.1
Arabidopsis thaliana	AT4G21366.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF11883.5	DUF3403	Family	118	157	31.5	1.3e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0042742	P	defense response to bacterium
GO:0005739	C	mitochondrion
GO:0005773	C	vacuole
GO:0005576	C	extracellular region
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0012501	P	programmed cell death
GO:0009506	C	plasmodesma
GO:0009751	P	response to salicylic acid
GO:0009875	P	pollen-pistil interaction
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0031625	F	ubiquitin protein ligase binding
GO:0046777	P	protein autophosphorylation
GO:0071215	P	cellular response to abscisic acid stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network