result

Gene information

Detail information of AfisC4G04336

Location

Gene	Chr	Start	End	Strand
AfisC4G04336	chr4	837181835	837183215	+

Sequences

CDS

Protein

Gene

>AfisC4G04336
ATGCGGCGCAGTGGAAATGAGGCTTGGGTTCTGGTAAAAAGACCCATGTTCGATTCCTACCATGCACTTCCTTATCCTATATAAATTTACCCGGGGGTATGGGGCTTGGATCAGCGGACGGCTTTACTATCCTCAGGAGTTTACCGGCCCGTCGGGTTCTCCTGGGTTAAAAAAAAACGTTGTCTTCACTAACTAATCTTTGGCAGACATTAACAAACGTAGAAATCCTTTACATCATGCTATAATCATACACTCAATCCATATATACATTCACTTTCAATGCACTGATAATTAAATGTATTGCAGAGAATGGCTCAAAACAACTATATTGATGATCAACTTGATATTATGTGCGAGGGCTTCTTCGACAACATCGATGAGTTGTTGGACTTCTCTGCCGACGAAGAAACTTTAGGGATGGCCGATTCTAACAATGCCCTTATGAACATTCCTCCAGCTACTGAATTTCCTGCTCTGGGTAGCAAAGGTGTTCAAGTCATGCCTTCTTCAGAGGAAAACAAAATCGTATGTTACCATTCTTTAGACATATGTTATTCTCTCTGTGAGTTTGAACTTTAATGTATTTCAAGAGTTCAATGCACTGGTAATAATAATTTTATCTATAATCCAGAATTGAAAAATGGATTAAACCAAACTTTACTCTCTTTTTTTTTTCCTAAGTGAATCCTCTCATCGTTTTTAGGGTAATGATTTTGGCATGAATGAAGATTGGTTTTCAAATTTCTTAGACGACGTCAACCTAGACGAAGAAATGAAGAAAAACGAACCCCTGTTCGTATCATTCAGCCCCGACTCTGTGCTTGAACCGAGCAACCTCAGCACTGAGAAGATAATATCACCCTCGTCGTCTTCCTCCTCGTCGTCATCATCATCTTCATCCTCCTACACCACATCTCTGCCATCATCAAGCCTCTCAAAAGCTCCGATCCCTGCACGTGCACGCAGTAAGAGGCCACGAAAGCCCATAATCCCAGTGCCACCTCCAGCACCACCACTTCTACCTGCAGCACCAGAGCCAGCGACCATCAAGAAGATCAAAATCAAAGTAAGAAGCACCGACCCAGAAGACAGCACAGGAGCCAGAAAATGCAGGCACTGCGGGATACAGAAGACCCCACAGTGGAGGGCAGGGCCCATGGGGCCCAAAACCCTCTGCAACGCTTGTGGGGTACGTTACAAGTCCGGAAGGCTGTTTCCAGAGTACCGTCCTGCTGCTAGCCCCACGTTTGTGCCTAGCGTGCATTCCAATTCGCATAAGAAGGTGGTGGAGATTAGGAACAAGGTTATTGAGACTAAGGTTGTGAATGAGTATAACCCTGCTGCTAAGAACTGTGATCTTCTCAAGTATATTAGGGTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_028552410.1	2.6e-35	GATA transcription factor 4
Swissprot	Q9SV30.1	5.5e-30	GATA transcription factor 8
trEMBL	A0A2I0WIN1	1.9e-35	GATA transcription factor 9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32890.1	49.04	4e-33	138	GATA9	GATA transcription factor 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04336	AT4G32890.1	157	64	5	162	308	135	285	49.04	4e-33	138
AfisC4G04336	AT3G54810.1	67	10	0	218	284	229	295	85.07	5e-32	134
AfisC4G04336	AT3G54810.2	67	10	0	218	284	229	295	85.07	5e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	220	253	57.7	5.8e-16

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009735	P	response to cytokinin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010187	P	negative regulation of seed germination
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network