result

Gene information

Detail information of AfisC4G04356

Location

Gene	Chr	Start	End	Strand
AfisC4G04356	chr4	841577926	841580364	-

Sequences

CDS

Protein

Gene

>AfisC4G04356
GCGACTCCTCGGGCAACATAGGAATCGCGTTCTTGTCTTTTGCGCAGCCGCGTTTAATTCTTTCTGTTTTCTTTTTCTAACTAGGTCCTTTTTATGTTTATTTTTACTTATTTATCCCTTTCCTTAAGTAGCCACAGTCCTTCTCTAAGCTCGCCTACAAAAATTAGCGAACTTGAAAGCTAGGTTTATGATGAAGCAGAAGAGTGCAATCACCGAAGAGGAAGAGAAAGATGAAGCTGACAGTCGTAATGCGAGTGGCTGTTGGATTAAGCTCAGATTGATGAAAAGTAGCTGTATCTCTTCGAGATCTAAAGTGGATAATTCTACAAGTAGCGCTATTACTCATTGTGGTATGATCTAATTTTGATTTTTTTTGAATTTGATGCCTTTAATTTGTAATGTGAACGTAAAGGTATTAATTTCAGGTAAATTCGTCTATATAAGGATGCCAATTAACTGATTTTATAGACGAACTTGTTTATTCAGTTTGGGTGCAATACTATTATTTATTTACTTGACGTATCTGATTCATGCTGGGCGTGTTTTAAGTCTTTTCCTTTTGGGAGCTATCATGCTACATTATTCATGGTAATAATTGAGGAACTTTTTTTAGATTTTTTTTAGGTTAGCTTTCATGTGTTAAAAAATAGAATGCTTAGTATAAACTTTAAATTCTACACTTTAGAGCATCTTCAACCCTTCTACTTTGTAACGTCACAAATTAACTATGTGGCATGGTTTGTTTAACATTGTGAAGAACATGTTAAATGATTTCATATTAAAAAACAAATTCACACCTTTCTTTACTCCAATGCAATTGTAGTGAAATGAACTAACACTAATTAATTTTGTTCATGTGTCATCATATTAGTGGTGCTTACTAATTGACATTGTTAAGTAGAATGTCTACTACTAGACATTCTCTTTCACAATGTCTAGTAAATGTTTTGACATGTCATCATTTACATTTAGTCTACAATTGCATTGGAGATACAAAGTTGAACGAAAATCCTAATTATCTACATGACATTGACATTACATTATAATAACATGAAGGTTGAAGATGCTCTTACCATTTTGAAAAGCTTGTAAGGGGTTATAAAATTAGACAAGTGAACCTACATTCAAAATTGTGTATTACTACTTATACTAGTACAACCATATAATAGTGGGGAGCCGACCATTCGATTACTTAATTTAAAAATAAAATAAAAAATTAACTGTAGTTTTTTCATTAATTTTAGTTAAACATCAAATGATGATATGTTGTAAAAAAATTTAGATTTGAAGAGATTTAAGGAGATATCCGTGGAGAGAACAAAGAAAATAGTGCCGGAGAGTGGAGAGATTTAAGAAGACATGTTCATTGTTTTTTTTGTATTCACACTACTTGATTTTGCAAGCCTACGGTAGACAAACTACCTAATGATTGGTTTGATCATGGCAATTGTTCAATGTTGCAGTTAGAACTGGAACTAGATAATTTACTTTACAAGCATCACCTGGAACCATTGGCAGTACCTGCTAAACATGTATAGAAAGATATATGACATGTTATACTGTTAGCATCAAAATGTACTATTATTCTTGTGATTGGTGCGTAATTAGAATAACATTCCTATCACTTAATTTAAAACAACTAGAATAAACAGCTCATGCAATATTAAAACTTTAAAACCTCTAATCCTAGTATGTAACTTTTGACTTTCATTATATGTTATAAGCTCTTACTTCAGATGAACCGTATGTAGTCCATTGTCTACATGAGTATCATTTCTTCGTTTTGATATTAAGTACAATAGTTATTGTTGCCTATTTGCTCACATATCCACATGTATAAACTAAAGTTTGATCATGCAGAAAGTAGATCTATAACTGAAGGTGGCAAAGACCATCCAACTGCTCCAGTAATTTCTGGATCAACAACCACCAGTAATGCAGAAAGCAGTTCATCAGCAAGCAGATTTGGCGATGAATTAAAAGTTGCATCTCAACTCAGAAAGTTCACATTTAGTGATCTCAAATCTGCTACAAGAAACTTTAAGCCTGAAAGTCTTTTAGGCGAAGGTGGCTTTGGTTGCGTCTTTAAAGGCTGGATAGAAGAAAATGGAACTGCTCCTATGAAACCTGGCACTGGGCTTACAGTTGCTGTGAAGACACTAAATCATGACGGACTACAGGGTCACAAAGAATGGCTAGTATGCACATTCATTTTTGTGCATTTCATTTACTTGTTTTGCCCTTAAGTTGAGCTGTGTATTACCAATGTGTATTTTGCAGGCTGAAGTGAATTTTCTTGGCGATCTTCTTCATCCTAACTTGGTTAAGTTGATTGGGTACTGTATAGAGGATGATCAGCGGCTACTTGTTTATGAGTTTATGCCTCGTGGTAGTTTGGAAAACCACCTCTTCAGAAGTAAGCAGTTTCAAAGTCCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020098623.1	4.2e-88	probable serine/threonine-protein kinase PIX7
Swissprot	Q9SRH7.1	8.6e-70	Receptor-like serine/threonine-protein kinase At3g01300
trEMBL	A0A8B9A6B4	2.3e-88	probable serine/threonine-protein kinase PIX7 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15080.1	69.67	6e-80	293		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04356	AT5G15080.1	211	49	4	15	212	31	239	69.67	6e-80	293
AfisC4G04356	AT3G01300.1	191	56	2	22	212	45	233	69.63	2e-75	278
AfisC4G04356	AT3G28690.2	212	67	4	1	212	1	200	62.74	6e-72	266

Ortholog group

Species	Genes
Allium cepa	g164349.t1
Allium fistulosum	AfisC4G04356
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	119	213	60.4	1.5e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0007166	P	cell surface receptor signaling pathway
GO:0009507	C	chloroplast
GO:0046777	P	protein autophosphorylation
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
GO:0080142	P	regulation of salicylic acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network