result

Gene information

Detail information of AfisC4G04406

Location

Gene	Chr	Start	End	Strand
AfisC4G04406	chr4	848815111	848818071	-

Sequences

CDS

>AfisC4G04406
ATGTTGGATCTAAATGACTCACCAAGTCAAACCGAGGACAAAGAAGCAGAAGATAATGGGCATGAAAACTCAAGCTCGTCCGAAATCATTACAAGCAGTAGCCAAGATAAGATCTTTACGCTTCCGAACGGTAACCATGATGATTTTATAACGACCCAACAATTTTTCCCTGTGCATTCTACCGCTGAGGTGTCGCCACGTGGACCCTTCCCTCAAGCTCAATGGGTTGGCTTACAGTTTCGGCAGTCGTCGGAGATCGCCGGAAAATCTCCGGCGTCGGCGGTGATCAAGAAGAGCAGACGAGGTCCTCGTTCTAGAAGCTCCCAGTACCGTGGAGTTACTTTTTATAGGAGGACTGGTAGATGGGAATCGCATATTTGGGATTGCGGAAAGCAGGTTTATTTGGGTGGATTTGATACAGCACATGCTGCAGCAAGAGCTTATGATAGAGCAGCAATTAAGTTTCGCGGAGTTGAAGCTGATATAAATTTTACTCTTGAAGATTATCATGATGATTTGAAACAAATGAGCAATCTCTCAAAGGAGGAATTTGTGCATGTTCTTCGTAGACAAAGCACTGTGTTTCCAAGAGGAAGTTCAAAATATAGAGGGGTAACATTGCATAAGTGTGGAAGATGGGAGGCAAGAATGGGTCAATTTTTGGGAAGAAAGTATGTATATTTGGGTCTCTTCGACACTGAAGAGGAAGCTGCAAGAGCTTATGATAAAGCTGCTATAAAATGTAGTGGAAAAGATGCAGTCACCAACTTTGATCCAAGCATTTATGCAGATGAATTTAATTTGAATGATTGTAACAGCAATGATCATAACCTAGATCTTAGTCTAGGAAGCTCAGGATCAAATAGAAATAATCTTGATCAAAACGAGGAAGAATGCTCAGTGGGAATGGATCAAAGAGTCCCTATGATTTACGAGTCAGACTGGAGAAACCAAAGCATGCACAAAATGTTTGATGACAAGCTGGAGTTGCCTGCACAAGTAAGCAGGATGAACTTTCCTTATGCACGAGGATTACACTTTCACGATTCGGTTGTTCGATTTCCACCTAATGGGATCAATGGATATACCCGGAATGAGTTCAACCCTTTCAGATATCACAATGCAATGCAGCAGCTTCCAAGTAGCAGCACTGCAGCAATGAGTAATAGAACTCTTGATCTTTCAATGGGGGGCGAGCAACATGGATCAAGCAATGGCGCACAGTTTGCAGCAGCATCATCAGGATTCTCAACACCAAGTTGGCTACAAAATAGCACACGTAATTAA

Protein

Gene

>AfisC4G04406
TAGAAAATGCAAATTGCTGACATCTCTACTTCATTAATCTCTTTTCTTCCCTTCCCCTCTCACCAATCAAATACAATCACTATGTTTATAACTTGTCGTTTCCAATTCAACATAATTTGCTCGAAATCATAAATAAAAACTTTATCAGAAAGCGAAATACTTTCATCAACAGCAAAAAAATGTTGGATCTAAATGACTCACCAAGTCAAACCGAGGACAAAGAAGCAGAAGATAATGGGCATGAAAACTCAAGCTCGTCCGAAATCATTACAAGCAGTAGCCAAGATAAGATCTTTACGCTTCCGAACGGTAACCATGATGATTTTATAACGACCCAACAATTTTTCCCTGTGCATTCTACCGCTGAGGTGTCGCCACGTGGACCCTTCCCTCAAGCTCAATGGGTTGGCTTACAGTTTCGGCAGTCGTCGGAGATCGCCGGAAAATCTCCGGCGTCGGCGGTGATCAAGAAGAGCAGACGAGGTCCTCGTTCTAGAAGCTCCCAGTACCGTGGAGTTACTTTTTATAGGAGGACTGGTAGATGGGAATCGCATATTTGGTTTGTCTTCTTCTTTGTTTTTTTTTTCTTTTTCCTTTTTCTAAACAAATCCAACAACAATTTGATTCTTACGTCGCTCACGCACACAGGGATTGCGGAAAGCAGGTTTATTTGGGTATGTATCAAGAGAAAAATAATAGTAATCTTTAGTTGAAATTCCTTTTCTTTCGATCAACTATATGTAATATGGCAAATATTGTAGGTGGATTTGATACAGCACATGCTGCAGCAAGGTGAGTCATAACAATAAAATACACAATTATTCGATAATTACTCAGTTGCTTGGATTGCACTACAGAGCTTATGATAGAGCAGCAATTAAGTTTCGCGGAGTTGAAGCTGATATAAATTTTACTCTTGAAGATTATCATGATGATTTGAAACAAGTGAGCTTGTACATTGTTAATTACTTTTCTTCTTCTTTACATTGTCAAGAAAGAATGTAAAGATGAACATGTACTGTTGTTGAATAGATGAGCAATCTCTCAAAGGAGGAATTTGTGCATGTTCTTCGTAGACAAAGCACTGTGTTTCCAAGAGGAAGTTCAAAATATAGAGGGGTAACATTGCATAAGTGTGGAAGATGGGAGGCAAGAATGGGTCAATTTTTGGGAAGAAAGTAATACTTCTTGAGCTTGTATTTTTTTTTATACCTCTTTCTTTAAGATTGACATGTAAATTTAAATGTTGGAATGTATTAGTAGGTATGTATATTTGGGTCTCTTCGACACTGAAGAGGAAGCTGCAAGGTAAGCTAATCACATTGAGTCGGTAAAGTCTTATGTGTATACTAGTGTGTAGATCACTAATACGATGTGTTTATTGTACAGAGCTTATGATAAAGCTGCTATAAAATGTAGTGGAAAAGATGCAGTCACCAACTTTGATCCAAGCATTTATGCAGATGAATTTAATTTGAATGGTGAGTTCATTGTAGCTCAATGTTGATTTATGAGCTCAAAATAATCATCAATTTTTTTTTGCAGATTGTAACAGCAATGATCATAACCTAGATCTTAGTCTAGGAAGCTCAGGATCAAATAGAAATAATCTTGATCAAAACGAGGAAGAATGCTCAGTGGGAATGGATCAAAGAGTCCCTATGATTTACGAGTCAGACTGGAGAAACCAAAGCATGCACAAAATGGTACACTAACTTTGATCATATTCCTCTTTGTTTTCATACAAACTTTGATCTTCAAATACTGTCTAAACTTACAAATGCGATCTTTTGATTTTCAAGTTTGATGACAAGCTGGAGTTGCCTGCACAAGTAAGCAGGATGAACTTTCCTTATGCACGAGGATTACACTTTCACGATTCGGTTGTTCGATTTCCACCTAATGGGATCAATGGATATACCCGGAATGAGTTCAACCCTTTCAGATATCACAATGTGAGTTATTCCATTGCCTTGTTATTTTATACAATAAGCTCCCCTAGTAACGAGTTCTAATGTATATGTCACTATTACATGTTTAAGATTATGGGCTTTAACTATTAGAAGTAACACAATCCAAAGTAAGTTGGCATTTGAATTCAAAGTTATAAAGTTTAATCAGAGGGCTTTGTTTAATGTCATGAAACACTTGACCATTAAACTTTTTTGTAGTCCTTACTGAAGATCTTAATGCTAATCACAATACGAAAACACTGAAAATATGTGTACAATTCTGAATTAAAATAAATCACACTTGCAACTAATCTGCATTTAGTGTTCAGACTTCATATTTGAAACGAATCACATAGGCTCGTTTAACAGCTATGTGTCATAAAGTATCAATACTATAATCATGAAAAGTTTGGTTTTTTTTAATAATTAATGGTCTAGGTTTTACGTTACTCCTGTGCATTACAACACCAGTGTCGCTCGACAATGTTGACATTTGAAAATAAGATATATTTCTGTTCTTAATATCGTTGTTAGTTGTGTAATACTATACTGAACAATGTGATAGGCAATGCAGCAGCTTCCAAGTAGCAGCACTGCAGCAATGAGTAATAGAACTCTTGATCTTTCAATGGGGGGCGAGCAACATGGATCAAGCAATGGCGCACAGTTTGCAGCAGCATCATCAGGATTCTCAACACCAAGTTGGCTACAAAATAGCACACGTAATTAATTCAGCACTCACAACTTTTTCAGGGCCAAGGTTATTATTTTTATCACATCAACCTAACAATTCTCACCGAACCCATATTTATGAACTCTATCATCATATTCATCATCTTCATTATGATCATTTATTATGTATATTGTGTGGGGGACATTTTAATCCTTTAAATGGGTTAACTAGAGGTTTAGATGTGTTTCAAGCATGTATATTGTATTTTGATGTTCTGATATCAATGTTTTGGGGGTTTCAGAGCAACAGCAAATTCAGTTACCTTTTGAGTTTGAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019702222.1	5.9e-110	APETALA2-like protein 5
Swissprot	A0A0N7KJT8.1	4.1e-100	Protein SHATTERING ABORTION 1
trEMBL	A0A6J0PAW2	4.3e-110	APETALA2-like protein 5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36920.1	63.61	4e-93	338	AP2;AtAP2;FL1;FLO2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04406	AT4G36920.2	316	89	4	1	290	1	316	63.61	4e-93	338
AfisC4G04406	AT4G36920.1	316	89	4	1	290	1	316	63.61	4e-93	338
AfisC4G04406	AT5G67180.1	327	95	7	1	310	1	307	59.63	9e-85	310

Ortholog group

Species	Genes
Allium cepa	g133784.t1; g275018.t1; g302337.t1; g319506.t1; g478542.t1; g503810.t1; g519777.t1; g69544.t1; g89789.t1
Allium fistulosum	AfisC4G04406
Allium sativum	Asa5G03649.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g55560.2; LOC_Os04g55560.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	108	157	36.2	4.7e-09
PF00847.17	AP2	Domain	200	248	40.4	2.4e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0005730	C	nucleolus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009408	P	response to heat
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009658	P	chloroplast organization
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0019432	P	triglyceride biosynthetic process
GO:0019953	P	sexual reproduction
GO:0030154	P	cell differentiation
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network