result

Gene information

Detail information of AfisC4G04721

Location

Gene	Chr	Start	End	Strand
AfisC4G04721	chr4	896033290	896035240	+

Sequences

CDS

Protein

Gene

>AfisC4G04721
ATTTTTTTCACCTCTAATTTTCAGCTGTTGCTTTGATTGTTTCACCTTTTAATGCTTATTAATTCCTAATTTATAGTAAGCATTATCTTTCATATTTTGTGTGAATCAATTCTATTATCCATTATGCAAAATTATTCAACTTTTGTATCTTTCAGTTTTCTGTAGTTTGAGAATTCCACATACATTCTAGTATTCTCTCATTCTAATCTTGTTGAAGAAGACTTTCGGAATCTAGAAAACTATTCCTCGATTCGTTACTACTTGCTTCCATATATAATTTGCATACATCAAAAGGATTCATTTTATCTTTTAGTCACTTTGTTAGTGTTCCAGAATGAACAATCGAAAAATCCGAACTCGTGATTGTAGTTATTGGTCAATAAGTGATGCTAATATCAATAGCATCAATTCATATTTTGGAAATTATGATATCGGTCCTCCTTTACAAAGGCCCCGAATTCAATCGGTTGAAGGAACTTTTTCTGGTACCAATTCAAGATGTGTTGGCACAAATCCTTCAGATTTTTATGCTGCTGAAAGATTGTTAGGGTTTCCAATATTTGAACATCAGCGTGAAACGATTTCTAACAAAGATATGTTTGAAACTCGGTTTGGATTAAATTCAGAAAAGCAGAATTATACATTGGAGTCAGTTGTGAATTTTGATGATGCACACAGACATGCACAAGGAAATCCTAAAAATTGCACTGTAAGTAACATCATTTTATGTTTTGAATGTTAAGTATGCAATTTTAGATGCTGTTTTGAATTTTATTTTGTTTTGGGTAGGTTGAATGTGAATTTCCGAGTAATTTGAATTCAAATTTGAATTTTGATAATGAGAAAGGAGCACCAAATGCAACTGGCAGTGGTGTTCAGAATAAACCAAGAATAAGGTGGTCTCAGGATCTCCATGAAAAATTTGTTGAATCAGTTGAACTACTTGGAGGAGCTGAGAGTAAGTAATTGTATAATTTTATCACAACCAATAAAATTTTATGCAATATCATAACTTAAAGAGCTATTCAAATATCCTGAACACTTGTAAATTTGATGAATACATAAACTTAAATTTTAGTTTTCTTTTTAGGAGCAACTCCAAAAGGGATTTTGAGCCTGATGAAAACAGAAAATTTGACAATTTGTCATGTAAAGAGTCATTTACAGGTACCAATCTGCAGTTCATTTTTTGGTTTAACATAGCATTTCATTGATGGATTCATGTAAATTGACCATAAAGAAATTTGTTATGTGGCATTCAGAAATATAGAACTGCCAAGTTTATGCCTCAGTCTTCTAAAGGTAAATACTGTTTACATTTCATTTTTTCCCTGCAAGTCAATTTTTATGCATCATTACAACATCAAACTTTATAATTTTTCATTATTTTGAAGGTAAATTCGACAGACAGACTTCGACAAACGAAACAGAACAGCTTAACCCTCAAACGTTTGTATTCTGCATCTTTTAGTTTATGCAAACATGTTATATGTTCATATAGATAATTTATTGATGTTGATGACTTGATTCATGGTTCATATTTTTCAGTGGCATTCAGATAAGCGAAACTCTAAAAATGCAACTGGAAGTTCAGCGGAGCCTTCATGAGCAATTAGAGGCATGTCCTAATAAAAAGTAGTTTAACTGAAATGTTTCAAGCACAATTTTATTATACAGCTGTTTTTATTCTTATAGGTTCAAAGAAAACTGCAGATTAGAATTGAAGAGCAAGGAAGAAAACTTCAAAAAATGTTCGAAGAACAGATGAAGGCAAATGGAAAGTCAGAGAATGTATTTTCTGATGAGAACACTGAAGAAATGAATACTGGAACTCCGTCAGAAATCAGTTAGGAAACAATTATCAGTGTACAGAAGGGGAGCATTATTTTTGTTAAATGTATTATATTCCAGGTTGATACATAAATGGAAAGCTTGTGTGAATCAAATTCAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244547.1	5.4e-52	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
Swissprot	Q0WVU3.1	2.0e-27	Protein PHR1-LIKE 5
trEMBL	A0A6P5GKE6	6.6e-36	protein PHOSPHATE STARVATION RESPONSE 1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06800.1	60.56	4e-46	181		myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04721	AT5G06800.1	142	51	1	146	287	186	322	60.56	4e-46	181
AfisC4G04721	AT2G01060.1	153	70	2	140	290	1	150	50.98	1e-40	163
AfisC4G04721	AT4G28610.1	140	53	3	148	285	221	355	57.14	5e-39	158

Ortholog group

Species	Genes
Allium cepa	g416560.t1
Allium fistulosum	AfisC4G04721
Allium sativum	Asa5G04028.1
Arabidopsis thaliana	AT5G06800.1; AT5G06800.2
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	161	210	26.2	6.1e-06
PF14379.3	Myb_CC_LHEQLE	Family	241	287	72.8	1.2e-20

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003904	F	deoxyribodipyrimidine photo-lyase activity
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009956	P	radial pattern formation
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010628	P	positive regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity
GO:0080060	P	integument development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network