result

Gene information

Detail information of AfisC4G04821

Location

Gene	Chr	Start	End	Strand
AfisC4G04821	chr4	910173959	910178420	-

Sequences

CDS

Protein

Gene

>AfisC4G04821
TAATTATATGTTATTTAATAGGAAGGTGAAATGTCACTCTCGTGTTAGTGTCTCTCCCTTTAGAAATGGGGAGACACATGGATCATGCTTTTCGATTTGGTTAACGTGAGAGTGTGAAAATATCAAGATTTGATGCTCTCTCTATTCATTATTCATCATTATTACCTCTTTCCGTTTTCATTTATATTTATGATAAACTAAGCAATATTCATTGTTTGTAACACCCAAAACGTAAGTTTACTTCTCTTTTTCTCTCACTTCATTATATCAGAAGACAGAATTAGAAATTGAAACAAGGAGAAAGGGGCTTGCTTTAATCTCTGTGTAGCTGTGAAAATTTTGAAAAAGATGAGGTCTTGCTGATAAGAGCACTTTAGAAGGGTATATGTTTTTCGCATTTTCAGTTATCAGGTGATTCAATAACCTACTCTTTCCATATATATGTAAATTATAAAGAAGCTGAGATCTCGCTGAGCATATAGAGAATTGTAACAGTGAAAAAAGTGTATAAGTTTGTATCTTCTAATTAGCTATTAAGTTTAAAAAGACATTGGAAGATGGGGGATCCAGTCACCTTCCAGTTCTTTCCAGTCAATGAGCAGACGGAGCAGAGGACTATAGGTGGTGATGTTACCGCCGTTGATAAATCTGCTGACGTGGCAGTGGCGGCTAAGAAGAGCAGAAGGGGCCCTCGCTCGAGGAGTTCTCAATACAGAGGTGTTACTTTCTATAGAAGAACAGGGAGATGGGAATCTCATATTTGGTTGGTCTTATGTCTTTTAACCACAAATTTTTTATTTCTTAGTAGAAATATTTATCTCTTTTTTTTTTGTAAAATTGTTTTCCTTTATTATGTGCAGGGACTGTGGAAAGCAAGTCTATTTAGGTATCGTAATAATCGAATTTCTTTTTATGCATTAATCTTTGTTAATTTTGTGTATGTAAAAATTTTCATTTATGTTCAGGAGGTTTTGATACAGCCCATGCTGCTGCAAGGTAATACTGAATAAACCATAAATTTAGTCATTAGATTAATGAAGTTATATGCAAACTTACTGAATTTTTGACCAACTTTTATCATTTTCTTTAACAGAGCTTATGATAGAGCTGCAATAAAATTTCGGGGTAAGGAAGCTGATATAAACTTCAGTTTAAGTGACTATGAGGATGATATGAATCAGGTATACTAGTTCTATATTTGTCTGAAATATGTAGATGTTCTTTTACCATCATAACTTTGACATAAATTGTGGGAAAATGCACAGAATAAAGATCTAACAAAAGAAGAGTTTGTTCACGTGCTTAGACGACAAAGCACAGGATATCCAAGGGGAAGTTCAAAGTATAGAGGCGTGACATTGCATAAATGTGGGAGATGGGAGGCTAGAATGGGTCAATTTCTGGGTAAAAAGTAATGTATCAATCCTTATTATGGATTTAGATATGCACTTATTTTTTATAATGCAATATTTCTTTTTAAACAGGTATGTGTATTTGGGACTATTTGATACCGAGGAAGAAGCTGCAAGGTGACAAATTTATCGCCTATAGTTTGAAGATATTTAGATCCTATGATCATTTGGTAATGAATATTGACATGTAGGTTATAGTATTCTAACTTTCTTTGTGGTTGTTTGTAGAGCTTATGATAAAGCAGCAATTAAATGCAATGGGAAGGAAGCTGTGACAAACTTTGATCACGCAGCTTATGAGAATGAACTGACTGTAGACGGTTAGTTAATTTGATGTAGATTTAATATGAGAAAAGCTGAATTGAAACTGATACTAAAAAAGATTAAACTTTAAAGGGTGTCAGACTGATCAGAATCTTGATCTGAGTTTGGGTAGTTTAAACTTGAAAAGAAGCAGCTTTGATTCGGTAGATGAAGAAGGCTCTATTGGAATGGATCAAAGAGTACCAACAACTTATGGATTCGATAGGGATCGCACCACAAAGCAGAAGGTATATATACGCATATAGTTTCTTTCTTCATTTTTGTGCATATGTTAGAAAGTAAATAGCATCAAGTCAAATGGTTAGAAAGAGAATTTTGTTACATTATGGAGAAGATATTAAGATGCAATGTATTTTTGTGTGCTCTTAGTCAATACGATGGTAACCAATCATTTCACCAAAACCATTAAAAACAGTAGTCTTTGCGATTCCTTTTCTTTTCATCTATTTGCTTTTCTTTTGTGGAATATATGTGAATTTACATCACATTTTTTAAGGAGGTGCTAGGTACCTACATAGTAGATGCACATTTTAGGGATTTGTTGAAGGCCTGTAGTGTATGGTTTAGAGACTTGCCACTAGGCTAGTGGGTTTTAACCATTAAGTATGCTGAAGAGCCGTCGTTATATTTAAATTTGATTTGACAAAGACATGTTTGAAGAGATGACATTTCATGCATTGGTTGTTTTTTGCTAATATGGGCAAAAAAGCATATGAAAATCATGAAGTGCGTATTGTATAGAGTAGTGGCTTTTTCTTAAGTTTATTAAGGGTGCTACTATATACACCCATTTTTCTCCTTCTCTCACCCACCTCTTTTCGCACCCACCTATATTTCATGAAATACTTCTCTTACCCAATTGCACCCACCTCTAATTTTCTTTATTTTTAATAAAAAAAGCATTCATTCTTTCATCTTCTTAAAGCTGTAACAATAAATAACCATCTTCAACTCAATCTCATCAACTCCAATTATTTTTTCTACAAATTTCCAACAATTCAAAATTTTAATAGAAAATTATAGTTAATTTCATAATTTTTAAAAATTAATAAATTAAGATGTTAGACAATTTCATTTGAAATATCATTCCAAGTGATAAAAATTAAAAATATGGCAAAGAAGACATGCAAAGAAGCAATTGTTAAGTTAATAAATAAATTCGAAGTGAGGTTCTCTGTTAAGTTTGTGGAAATTTAAGTCTTTTGAGTTAACTACAGTGGTGGGTGTTTGAAGTGTTTTTTCTTAATTCTTTTACTATCTCTTTAAGTGGCATTGAGGAGTATATTGGCGGGTATATATAGTAACCCCATTTATTAAAGTGATTTTACTAGGTGCAAGTTGATTAGGGGGTTACATATACATATACATACATATGTATGTATGTATGTATGCACGCGCACACACATATATCTAACATTGGTAAAGTGTCATGAAAATCAATGTTCACATGGCATCAAGTTTGCATTCATTAGAGTTCAACAAAAGTGTGTATTGGTTTCCAGATTATGAATTCTTATTGGATTTGATTTAACAGCCTCAGATGTAAAAGAGCACTTTGTTGGTGCAAACCTGACAAGAAACTTAACTTAAGTTGAAATAAAGGATTAATTAGTAACCAGACTGCGTATGTGTCCAACTAGATGCGGTGCTCAAATTTGTCATAAGAGCACACATACTCAACACAGTTTTTCGAAGAGTAAATTACAAAAATAAGCCACAGTCCAAAACTTATTTCACAAATGGATATTGTCCGAAACTTACTACAAAAATAGGTTTCATTTCTGATTCCATATACACATTCTCAAAATGCACAGTATAATTTTCGATTTTGTACATGCGCATTTTACTCATATATAAAAACGAAAAACAAACATTTTTTGTAATAAGTTTTATATGAAGACTATTATTGAAATAAGTTTTTCGCAGAGATATATATCTAAGATGAGTCCTTTTCCAAAACAAACTTTTTTTGTTTTTGTTTTGTTGTTTTTGTTTAAGAGCATATGAGTTGATGTTTCAGACTACAAATTGTAGCACCTTTCATGTGGTACCACACAACCCTTGTTTCTTCAAATATGGGATTGCTTTTTGGACTTATAAAGAGTTATCTTTATTTTGTTTTGGTTGTGAATCAATGCTAGAGATATTTATTTCATTTTGTACTGTATTGACCCTAACTCAGCAAGCTAATCTCCAGTTCAAAATTTGAAAATCCGAGAGTTTTCTTGTGTCCTTTATTAGAAGTTTCCACTCTTATGTAGGGAAATGGAGTATACAAACACATTTGCAATTTTCGTATAATGATATTTTGAGCTGTTGGGCCAGTTGCATATAGACCAAAAATGGAACTAGGACAAATCTTATGTTTATATATTAATATTATATATAAATCTTCTACCCCATATATACATCTATGTAACTTGGTTTCTACATGAACAAATTTTTTCAATGCTATATTATACAACTTAAGTTGTGTGTATATATCCATCTATACTAATAAGAAAGTGTATGTAATACGTTGTATGGTGTATACGATACAGATTACAAGCGATAAGCAAGAAGTGGAGACGGGCCTTTCTCTATCAATAGATGGCGAGCAAAGTGTGAATTCATCGAAAGTGTTAGTCACAAAGGCTGCAGCATCATCAGGATTCTCGCCTCAGTTAGTTAAACCAACTCCTATTTGGTTGCAGAGTGGAATGAGCTTCAGTTTCCCCTTGGACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265583.1	3.4e-126	floral homeotic protein APETALA 2
Swissprot	A0A0N7KJT8.1	4.5e-91	Protein SHATTERING ABORTION 1
trEMBL	A0A5P1EYR3	9.0e-121	Polyadenylate-binding protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36920.1	53.44	3e-81	298	AP2;AtAP2;FL1;FLO2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04821	AT4G36920.2	378	107	10	5	323	61	428	53.44	3e-81	298
AfisC4G04821	AT4G36920.1	378	107	10	5	323	61	428	53.44	3e-81	298
AfisC4G04821	AT5G67180.1	337	107	7	4	322	40	352	55.79	6e-78	287

Ortholog group

Species	Genes
Allium cepa	g256880.t1; g329877.t1
Allium fistulosum	AfisC4G04821
Allium sativum	Asa1G03964.1; Asa2G01500.1; Asa2G02444.1; Asa2G02445.1; Asa3G00682.1; Asa3G00683.1; Asa5G04165.1; Asa5G04167.1; Asa8G03944.1; Asa8G04167.1
Arabidopsis thaliana	AT3G54990.1; AT3G54990.2; AT4G36920.1; AT4G36920.2; AT5G67180.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	50	99	36.7	3.4e-09
PF00847.17	AP2	Domain	142	192	41.7	9.2e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0005730	C	nucleolus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009658	P	chloroplast organization
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0019432	P	triglyceride biosynthetic process
GO:0019953	P	sexual reproduction
GO:0030154	P	cell differentiation
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network