Detail information of AfisC4G05211


Location
GeneChrStartEndStrand
AfisC4G05211chr4965611533965620451+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrQCT25556.13.5e-123SEPALLATA 3
SwissprotQ8LLR0.22.9e-90SEPALLATA homolog 3
trEMBLA0A4P8YU542.5e-123SEPALLATA 3

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G24260.166.534e-84 307AGL9;SEP3K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag159109.t1
Allium fistulosumAfisC4G05211
Allium sativumAsa5G04364.1
Arabidopsis thalianaAT1G24260.1; AT1G24260.2; AT1G24260.3; AT3G02310.1; AT5G15800.1; AT5G15800.2
Oryza sativaLOC_Os08g41950.1; LOC_Os08g41950.2; LOC_Os09g32948.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105790.92.3e-26
PF01486.14K-boxFamily8617493.65.7e-27

Gene Ontology
AccessionOntologyName
GO:0001708Pcell fate specification
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity
GO:0009888Ptissue development
GO:0009535Cchloroplast thylakoid membrane
GO:0009611Presponse to wounding
GO:0009765Pphotosynthesis, light harvesting
GO:0010093Pspecification of floral organ identity
GO:0016168Fchlorophyll binding
GO:0044425Cmembrane part
GO:0048481Pplant ovule development
GO:0048833Pspecification of floral organ number
GO:0071486Pcellular response to high light intensity
GO:0071492Pcellular response to UV-A

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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