Detail information of AfisC4G05217


Location
GeneChrStartEndStrand
AfisC4G05217chr4966461482966469753+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020261158.14.7e-124LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14-like
SwissprotO22800.26.3e-33Zinc finger protein CONSTANS-LIKE 14
trEMBLA0A5P1F5S05.8e-92CCT domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G33500.234.744e-60 229BBX12B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag174659.t1; g174661.t1
Allium fistulosumAfisC4G05217
Allium sativumAsa0G05650.1; Asa5G04357.1
Arabidopsis thalianaAT1G28050.1; AT2G33500.1; AT2G33500.2
Oryza sativaLOC_Os08g42440.1; LOC_Os09g33550.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00643.21zf-B_boxDomain95024.02.8e-05
PF06203.11CCTMotif42446657.68.5e-16

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0007623Pcircadian rhythm
GO:0008270Fzinc ion binding
GO:0042802Fidentical protein binding
GO:0009909Pregulation of flower development
GO:0010018Pfar-red light signaling pathway
GO:0010229Pinflorescence development
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0048576Ppositive regulation of short-day photoperiodism, flowering
GO:0048579Pnegative regulation of long-day photoperiodism, flowering

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.