result

Gene information

Detail information of AfisC4G05488

Location

Gene	Chr	Start	End	Strand
AfisC4G05488	chr4	1010897010	1010898974	+

Sequences

CDS

Protein

Gene

>AfisC4G05488
ATGAAGAAGATAAAAAAGGTAATAACTTGCATTTAAAACAACCACATGTGATTATAAGCTGTCTTTCATGAAAAAAAGAAGACCAAGCAACTAATTACTTTGTTTTTTACTATGTTAATACTTTAATGCATTTTTAAAATTTTAATTTAGTGTAATAGTTATGACGAGTGTTTTTGGGATTTATACATTTTAGATGCTACAGAAACCATTGATATCATAAAATATGCAATAGCCTGCAAAATTGCTGATTACCTGCCTTTCTTAGGATGATTGAACTTAAATGGATGGAAGAAGAAGGTAGCATCAATAGCCAAGTACATAAATGAGTTTTTCCAAAAACTGCTAGATGATATAAGACATAGCAGCACAGACGAACAGAAGAAGAAAACCATTATGGCAACTATGCTTTCGCTTTAGAAAATAGACCCTAAGTACTACACAAATGAAATCATTAAAGGGTTCGCCATTGTAAGTCTATACTAACTTTACTGATAATCAGTTCTTTGTGGTATATATAATAGAGATGTAGACCAACCATTGTTAATAATGAATTGCAGACTACGCTGGCAGCAGGAACAGACACGTCATCAAACACGATCGAATTGGGTCTAACGTTGCTTTTGAACAATCTAGAGAAACTAAAGAAACTACAAGCGGAGATCGATAACAACTTGAGCTTGATAACAATTGCACCCAGTGTTGTTTACCAGGTTAACCGTGCAAATAGAAAAACTGTAATTCTTCTTCTCAACTGCATATGTTTTTTTCAGGTTACCACAATTATACAACATACTGCTCTTTTTCATACCTTATCATGATAGTTAACCAAAACAAATTCAGATCATCTTCCGCAACGACGTGTCTATCATATCCTCTGCAATAATGTTCTCTTTCCTCATTGTAGATCAATGAGCCCCTAAACATACCTTTTCAAGAAGTACTTCATACTAAACTATGAAAATTCATTCTTATAGGGATATCAATCCACTTACCTAGCATCTAATCATGGCTGTTTGGAGGCGAGATAGATTTGAGTATATAATTTTGACAACCAAATCAGTTTATCTTTGAATGGTACCTAATATTCTAGTTAACAACAATTCAACTCACATTTTGAATCTTCTAATAGTATACTACAACGAAATGCTAACATAAAAAAATCATACTATAATTCAAAAAAAATGCTGCAAAACAAGACATAATAACAACTTATAATCTTTGTGCTTTAATTAAGTGCAATTAAAAATCAAAATAAAAAGGTGATGTAAAATATTATTGCCTTAATCCAGAGAGAGAGATTAGTCTACAAATTTCTCAAAGAAAAAACAACCCGAATCACTCATCTTTATCCTTTATCCTTCTAAACTGGTTTAATTTTTTGAACTTGTAATTTCCTTATATTTCAGGTAGATACAAACTTTAACAGGTTATGAAAATTAGAAACCCAAAGAATAGATTGAAAGGAACTTATGATGCAAGTAAAAGCAAGAAGAAATGTGCTGGAGGTGATGATATTGAAGTGGATGGTGAACAAGTTACAGATTAACCAGTAAAGAAGAGTCATGGTGGCTATGGTGCTCAACAACTAAACAACACAATTAATGGCATGAAAATGGTTACTGAATATAAAGCTTCAAAGAAGAAATCAGATGATCAAGAACAGCTTTCGGAACCTGTTGAAAGGAAATAACAGCTTTCTGCAGAAAGGGTAAAATTGCGACAAATAATTATGATAGCGGTTTCTCTTCCATTATTGATTGATCTACCATCTTTCTATAAAATTTTCAGGTTCTCAGTGTTCTTAAAAGGATAAGCGATGAAGATTGTTTGTTACTGGGTTTGAATCCAAAATATGCCCGTCCTAATTGCATGATATTACAAGTTCTACCTATTCCACCTCCTCCAGTTAGACATTCTGTTATGATGGACACATCGGCTATGAGTGAGGTACTTAGTATCAGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ACD63081.1	9.0e-17	RNA polymerase II largest subunit, partial
Swissprot	P18616.3	1.3e-15	DNA-directed RNA polymerase II subunit 1
trEMBL	A0A835DJ64	1.7e-17	DNA-directed RNA polymerase subunit

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G35800.1	75.93	3e-12	67.0	NRPB1;RNA_POL_II_LS;RNA_POL_II_LSRNA_POL_II_LS;RPB1	RNA polymerase II large subunit

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05488	AT4G35800.1	54	13	74	127	217	270	75.93	3e-12	67.0
AfisC4G05488	AT1G66540.1	55	26	10	64	169	223	52.73	4e-10	60.1
AfisC4G05488	AT1G66540.2	55	26	10	64	110	164	52.73	5e-10	59.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00067.19	p450	Domain	8	62	34.1	1.1e-08
PF04997.9	RNA_pol_Rpb1_1	Domain	71	127	51.2	1e-13

Gene Ontology

Accession	Ontology	Name
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000974	C	Prp19 complex
GO:0001055	F	RNA polymerase II activity
GO:0003677	F	DNA binding
GO:0006353	P	DNA-templated transcription, termination
GO:0046872	F	metal ion binding
GO:0005665	C	DNA-directed RNA polymerase II, core complex
GO:0005730	C	nucleolus
GO:0006283	P	transcription-coupled nucleotide-excision repair
GO:0006367	P	transcription initiation from RNA polymerase II promoter
GO:0006368	P	transcription elongation from RNA polymerase II promoter
GO:0006370	P	7-methylguanosine mRNA capping
GO:0008543	P	fibroblast growth factor receptor signaling pathway
GO:0031047	P	gene silencing by RNA
GO:0031625	F	ubiquitin protein ligase binding
GO:0033120	P	positive regulation of RNA splicing
GO:0035019	P	somatic stem cell population maintenance
GO:0042795	P	snRNA transcription from RNA polymerase II promoter
GO:0044822	F	poly(A) RNA binding
GO:0050434	P	positive regulation of viral transcription

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network