result

Gene information

Detail information of AfisC4G05527

Location

Gene	Chr	Start	End	Strand
AfisC4G05527	chr4	1019808757	1019809922	+

Sequences

CDS

Protein

Gene

>AfisC4G05527
ATAGTTGTTTGTATCATCATAAATAATTAGTAAAATGGTGAGGCAACCTTGTTGCGATAAAATAGGATTAAAAAGAGGGCCCTGGACCATTGATGAAGATCAAAAGCTCATCAGTTTCATTCTCGATAATGGCATTCTTTGTTGGCGCCAAGTTCCTAAACTTTCTGGTGCAATTTCTTCTCTGTTTTTCAGGGATTTCAAATTTTTAATAGGTTACAACTGTGATACTATATGTTATAGAGAGAACATAAGTAGGAGCTTCCATTTAACTTGTACTTTTACTTTGTTTTTTCTGCATTGTGCATTCACTAAGTGGGGTGTAATATCATGAAAATGATTTGAATTAACAATCACTTTGCATAATCTATGTAGGTTTAAAGAGATGTGGGAAGAGTTGCAGGTTAAGGTGGACCAACTACTTAAGGCCAGACCTCAAAAGAGGATCGTTTTCAGAATCTGAAGAAGAAGTTATCATTCAGCTACATTCAGTTCTTGGAAACAGGCATTTAATTTATAACCCTTCCGACGAATTAAGACTATATGTTCTCGGTTTTCATATATTTTTGAATCTAGCAAACATAATTACCATTCATTAATTTCAAAACAAACTATCCCATGTTGAAAATTAATGATGTTGATGCTGGCGATGCAGATGGTCTACAATTGCTTCTCATTTTCCTGGAAGAACAGATAATGAAATCAAGAATCATTGGAACACACGAATCAAGAAAAAATTGAAGCTTCTTGGTGTAGACCCTGTAACCCACAAGCCTCTTGATTCAAATTCTATCGTAAATATCAATGATAAAACTACAGAAAGCAAATACCATTCTGATGCGTGTTTGAAAAATGAAAAGTGGATTAAGGGGAGTGACGAAAATATAGAAGAGACGAAAATATCACAGGCTATGCCTTCTGTGAGCAGCAATACTTCATTTTCATTAGATGGCGAATCAAGTATCGAACTATCAGATAATTTTTGGGATGATAATATCGACTCATTAACTTCCTTTGAAGCAATGGATTACCTTGAAGATGTCTTATCATTTGTTAATGTCCCATGATTTTCATTATTTTGTTGTTTTACATCAAGGAAGTCAATGCTTGTTTTCTTCTTGTGGAGTGTTAATTTTAAATACCTGGGAAATGAAAGGGTTCTGTCAGTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252159.1	6.1e-66	protein ODORANT1-like
Swissprot	Q9C7U7.1	1.1e-59	Myb-related protein 20
trEMBL	A0A5P1FHA3	4.4e-66	Myb-related protein Myb4-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16600.1	60.43	5e-60	227	AtMYB43;MYB43	myb domain protein 43

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05527	AT5G16600.1	187	70	2	1	187	1	183	60.43	5e-60	227
AfisC4G05527	AT1G66230.1	192	74	2	1	192	1	187	58.85	9e-60	226
AfisC4G05527	AT5G14340.1	145	40	1	1	145	1	143	71.03	2e-59	224

Ortholog group

Species	Genes
Allium cepa	g143611.t1
Allium fistulosum	AfisC4G05527
Allium sativum	Asa4G01334.1; Asa5G04517.1
Arabidopsis thaliana	AT5G14340.1
Oryza sativa	LOC_Os02g49986.1; LOC_Os09g23620.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	41.5	9.8e-11
PF00249.28	Myb_DNA-binding	Domain	67	110	54.6	7.9e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001944	P	vasculature development
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009625	P	response to insect
GO:0009651	P	response to salt stress
GO:0009682	P	induced systemic resistance
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010200	P	response to chitin
GO:0010438	P	cellular response to sulfur starvation
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048364	P	root development
GO:0048658	P	anther wall tapetum development
GO:0080091	P	regulation of raffinose metabolic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network