Detail information of AfisC4G05605


Location
GeneChrStartEndStrand
AfisC4G05605chr410341632311034190974+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010930149.19.7e-71transcription factor bHLH129 isoform X1
SwissprotQ8H102.11.6e-41bHLH transcription factor bHLH128
trEMBLA0A7M3UQH94.8e-80BHLH transcription factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G05805.140.676e-55 211AKS2basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag105215.t1
Allium fistulosumAfisC4G05605
Allium sativumAsa5G04631.1
Arabidopsis thalianaAT1G05805.1; AT2G43140.1; AT2G43140.2
Oryza sativaLOC_Os02g39140.1; LOC_Os02g39140.2; LOC_Os04g41229.1; LOC_Os04g41229.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00010.23HLHDomain27632136.53.3e-09

Gene Ontology
AccessionOntologyName
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001228Ftranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0005634Cnucleus
GO:0046983Fprotein dimerization activity
GO:0009733Presponse to auxin
GO:0010119Pregulation of stomatal movement
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0042335Pcuticle development
GO:0048573Pphotoperiodism, flowering
GO:0048766Proot hair initiation
GO:0048767Proot hair elongation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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