result

Gene information

Detail information of AfisC4G05626

Location

Gene	Chr	Start	End	Strand
AfisC4G05626	chr4	1037769465	1037771201	+

Sequences

CDS

Protein

Gene

>AfisC4G05626
ATGCAAAGTCCAAATCATTCTTTAGAGATCACAGATCCTACTTCTCTAGGAAGTAAATGGGCTGCGAAAATACTGAAAGATTGTGCAAAAGCAATTCATGACAAGGATTCAAGTCTCGTTCAACACCTACTATGGATGTTAAATGAGCTTTCATCTCCTTATGGAGATTGCGACCAAAAGCTAGCATCCCACTTCCTGCAAGCTTTATTTTGTAAAGCAACCGATTCAGCCGGCCGTTGCTATAAAACTTTACTATCAGTTGCAGAGAAGAACCACTCATTCGAGTCCGCTCGAAAAGTGATCCTCAAATTCCAAGAAGTGAGCCCGTGGACTACTTTCGGCCATGTAGCATCTAACGGTGCAATATTAGAAGCATTTGATGGAGAATCCAAACTTCATATTATAGACATAAGCAACACTTACTGCACTCAATGGCCAACTTTGCTAGAGTCATTAGCTACACGCAGTGATGAAACACCTCATCTAAGGCTATCAGTCGTAGTCACTGCTAACATGGGCGGCACTGTTATGAAAGAAATAGGGCAAAGGATGGAAAAGTTTGCCAGGCTAATGGGGGTGCCCTTTGAATTTCAGGCTGTGAGTGGTTTCTCAAGGTTAAGTGAGCTTAAAGTGGACGACTTTAATCTGAAAGAGGACGAGGTGGTTGCTGTAAACTGTGTTGGAGCATTAAGAAGAGTTGGAGTGGAAGAAAGAAGGAACTTTGTGGGGTTGATTCGTACTATGAATCCTAAAATAGTGACTGTAGTTGAAGAAGAGGCAGATTTTACTAGCAGTAGAGAAGACTTTGTAAACTGCTTCGAAGAGTGTTTGAGGTTTTACAGCTTGTATTTTGAGATGTTGGAAGAGAGTTTTGTAGCAACGAGCAATGAGAGGTTGATGCTGGAGAGGGAGAGTTGCAGGAGCATTTTGAATATTGTAGCGTGCGAAGGAGATGGTGGCAGTGAATGCGAAAGGAGGGAGAAAGGTAGTCAGTGGAGTGGAAGGATGAAGGAGGCGTTTTCGACCTTTGGATTTAGCGATGATGTCGTGGATGATGTGAGAGCGCTCCTGAAGAGGTACAGGGCAGGATGGTCCCTTGTGCCTGTACAAAATGATGCCGTGTCTGTGCCTGGGTTGTATTTGGCATGGAAGGATGAACCAGTTGTTTGGGCATCAGCTTGGAAACCCTAATTGGTTTAAGTGTTTGATCATTTTGTACCTAGATTTTTGGCTTAAGCAAGAAGTTTGTTTCTTTTTAAGAGTGTTGATGGATGCATGATTCATTGAGGAAGGATAGTACAATGCATAGCGTAGAAATTGTGTGGAGTTATGCTTGGTAAGAACCCTAGTTTGTAGATCGGTTATTTTCTTTTTTTCGTTTTCTTGTACTGATAGGCAGGTGGCTTCATTTGGAGATTGTTTTGTTTGCTATTGATGCATACATGCACTTTATAACATTTTTTTTCGTTTCCCTATTTTCTTATCCGTGACCCCCTCCTCCCTGTGAATTGTAGTGTAACTTGCTGATTCATTTTATGTTTTGATGGTTTATCTAGGAAACCTTCCTAATTTTTGTTATGCGAAGTCCATTAGTCAAGCAGATAGAGTGTGGATTTATACCAATTATCAATTATTTATTAATATTCTTTTGATAGCTGTTCAGTATCTATTAATTACTCGAACGTTAACTACGAGCATATTGATGCATTCATACATTTTATAGCTAATGCAATTTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010912883.2	8.6e-172	protein SHORT-ROOT
Swissprot	Q9SZF7.1	4.1e-118	Protein SHOOT GRAVITROPISM 7
trEMBL	A0A6I9QNS7	6.2e-172	protein SHORT-ROOT

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37650.1	54.26	2e-121	432	SGR7;SHR	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05626	AT4G37650.1	411	161	9	7	396	126	530	54.26	2e-121	432
AfisC4G05626	AT3G49950.1	398	224	15	23	396	29	409	33.42	7e-51	198
AfisC4G05626	AT2G04890.1	380	237	11	24	395	53	413	30.53	2e-44	176

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	23	395	320.4	1.3e-95

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0006351	P	transcription, DNA-templated
GO:0008356	P	asymmetric cell division
GO:0009628	P	response to abiotic stimulus
GO:0009739	P	response to gibberellin
GO:0009755	P	hormone-mediated signaling pathway
GO:0009956	P	radial pattern formation
GO:0031323	P	regulation of cellular metabolic process
GO:0032350	P	regulation of hormone metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0045930	P	negative regulation of mitotic cell cycle
GO:0048366	P	leaf development
GO:0048580	P	regulation of post-embryonic development
GO:0055072	P	iron ion homeostasis
GO:0060255	P	regulation of macromolecule metabolic process
GO:0071229	P	cellular response to acid chemical
GO:0080090	P	regulation of primary metabolic process
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network