result

Gene information

Detail information of AfisC4G05663

Location

Gene	Chr	Start	End	Strand
AfisC4G05663	chr4	1043534771	1043538265	-

Sequences

CDS

Protein

Gene

>AfisC4G05663
AGAAGGATGTGAAAATCCACAATCCTGAAGGTTACTGAGATTCCTTATTGTCATATAAATACAGCATGGTGTATACCACGATATCACATGTGAAAGTTTGCTACCAAAATGAACATATAAAGTATTGCAAGATATGCACTTTTCGTAGGTGAGGTAAGAAACTAAATAAACAAACACAATTCAAGCATGAATTCAACAATGTATACTAATATTCTCCACTTGCATGTTCAGGGAAATGAATGATATCATTTCTTCTAGAGGTAACTTTTCAAAGAGGAAATTATTCTCACAAGGAGGTAATATACATTGCAAATCAGGGCTTATGCTGTCAACTGATGCTAAGCCTAGGTTAAAATGGACAGCAGAATTGCATGAGCACTTTATCGAAGCTGTGGATCAACTTGGAGGGCCAGACAGTAAGTACCAAAGTTACCACATTTGTTTTTTTTTTATTTGCTTCCATTTTTCTTATATATAGATGTGTGTGTGTGTAAGCAAGAAATAGAAACGGAAAAAATAAAGTGAACTATATAAATAGATATAAAAGCTAAAATTGGTGTTCATGTGCAGAGGCTACTCCAAAAACAGTCATGAGGCTCATGGGCATTCCAGGTCTAACATTGTATCACCTTAAAAGTCATCTGCAGGTACAAAACAATGATTGTGCACTTCCCATGCGTGTGTATACATCAGTGTATTATACATCGTTGCATGTGTTATGTGTCTATCTTCTGTGCTTGCATGTGTTATGTGTCTATCTTCTGTGCTTGCATGTATTGTCTGAGAACCAAGAATTACAATTACTCTGGGGGCTAACTGGGAATTCATCATTATCAGGACCAGCCCTAGCTAATAGGTTGTGCCCTAGATGAATGATCATATAAAATGGATAAAAAATAATACTCGTGCAATTTTGAGGGGTTGAACTTGTAGAAAAATCTCAGCTGCAACCTAAACCACTAAACCATTAATAACTAGCTAATGGATCGTGCCCTTAAGATAATCTGATTCGTCAATTTCTTCCTCGCCTGATTCATATTCATCGGATTCTTTGAATTCCAAATGGGAATTCTGTTTGTGTATTTGATGGCGTTCTTAATAGAACCATTCTTCCTCAGATGAAGAAGTTTATTCCTCCGATGAAGAAGCATTAGATTGTAGGATTTTCATGGGAAACTAAGGTTTAGTTTAAAATTATGATGGAAAAGAATGAGCATGTGTGTGACTGTCTGGATGTAAGTTAGTTTAGTCAAAATGAATTAGTTTTGAATTTCAAAAAACAAGAAAAATAGCTTATTTAATCTAACAGACCATAAATAGTTGGAGTTAAATTTTCAAAATGTCCATTTAGAAGTTTTAACTTTTAAGTTGTTGAGGTCCGAATTACATGGCAAACTAGGCTTTAGTTTAAATATAATGGAATAAGGTCCGATCTTTAAATTGTCAATGATCGGTTTACAAAGAGTGTTTAGAAGTTTTAAACCATTTGGTCCTGGTTTTCAGGGAGTCCGTTCAAAATTTTTGCAAATTTGAACGCTTAAAAGATAAATTGTATTTGCCAATGAAAAATATTTTTTATACAACAAATTTTTTATCAAATGTACTTACAGTGGTTTTTACCAAACCAACACCAATGGTTAGACAAAGTTGTACTCTATAATCAAAATAATAACAAATGTTGCCTAATTTCTTTTCTACTTCTTCCACTAAAATTAAAACCCCAAAAAAAATTAAGAAAATTTTAGAATATGCTACATGTTTTCTACTTCATTACAACCACGCAAAGATCCAAGAACACGGTGAATCAGCAAAAAAAGTAAAATTTTCAAATTCACACTTACTTGCATAGTAAAAATAAAAACCTAGAGGACCATCAATGTGGTAAAAGCATAACCTAGAAGACCACTGACATTGTTAAAATAGTTTTTTAATACTCAACATAGGAGGTAAAAGTTTAAACCAAGGTGAATCACTACGCAGAGTACTACTTCAAACAATGCTACAGTAATAAAATTTGCATATTATATAAATTGGATTAACTAGGGTGTTGCATTTCCCTCGAGAGATTACCGTAGCTAGCGGGTTTCCTTGTCTTACCCTTGGGTTGGGCCAGATCATTATTTTCTTAATTGTTTCATTTGGAAAAGAAAAAAAGTCAACTTTATGAATGAGGTGTACCAAGATTTCAGAATTTGAATCTAGGATAAAGACTAGGGTGAACTACATAATTCCACTCGTCTGCATGTGTCTGTTTGGTTATTCATCCTTTCATTTTACAATGAAAATTATTATTATGTTGATTTCCTCTCTTTCTTTCAGAAATATAGGCTTAGTGAAAATCTTCGAGCTCAGTCAACTGCTAGCCCTACCAAAGATGGTGGTAAGGAAATGAACCCAAAATTCATCATTCGAAGTTTCAAAACTGGTAAAAATTATAGCACGTGATTATTTTGCATCACAGTGGTCCGATGCACTTCAGCAGTGGATACTAAATATAATGTAGTCGAAACTACCAATGGAGACGTACGGATAGAAGCCAACAAGTAAGAGTATTTTAAAAACTTCCCAAATTGTTCTCATGGACTAATCATGGTAATAAATATATTGCTGAGATAATTTAACATTCAGATCAAAGCAAATAAATGAAGCACTTCTTATGCAGTTGGAGGTTCAAAGACAACTGAATGAACAATTAGAGGTTAGATCAATTCAAAAGAAACTAGAAAGTGATTTTATTCGGTACCGTCAAACTTTGAGTCTGCTAAAATAACTCTATTACCAGATCTTATTTGATGGTAGAAAAGGAAGTGGAATTCAAAGGACTGTATTTTCTTCTGTTTAAACTGACTGCAAATCTGAAAGGTTGGAGCATGTGAAACACTGTGTTTTACTGCCCACAATAAAATAACTACTCTATATATCTATAGACTAAAATGAAACTGATGTTTCAAGTTGATCAATTCCTAATCGTAAAAATCAACTCACATATTTTAAATGAAGCTATCATTCATCGACTCACTGATGCAGGTACAAAGACGCTTGCAGCTCCGTATGGAAGCTCAAGGAAAGTATTTGCAATCAGTGCTGCAGAATGCTCAAGAAACTCTTGAAAAACAAAATCTGGGTTTACCCAGTCTTGAAGCAGCAGAAATTCGATTCTCTGAACTTGTAGCTACTGTAACAAATGGAAGTCCTACGAATCAAACTTTTGATGCTAACGAAAATGCAAGTTTACAGAGAGAATTTAGCTATCTACCAGTATATTCAAGAAATCCAAGGTTGAAAGACCCTTCCATATTTTCAGATCAAATGCAAAAAGATAGAAGTGGAGATTACAACTCTTTTGGCCAACTAAATAGTAAAAGGCAAACACAATTAAATTCAGATGGGGATACATGCTCAAAAGCACCATATCTCGATCTTAATGCACACGATGCCAATAATTCTGGCCCAGGTTGCAAAAAGTTTGACTTAAATGGTTTTAACCAGGATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	CAB3496070.1	4.2e-49	unnamed protein product
Swissprot	Q9SQQ9.1	5.4e-41	Protein PHR1-LIKE 9
trEMBL	A0A8K0IYQ3	4.0e-49	Myb-related protein 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04030.3	53.81	2e-62	235	MYR2	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05663	AT3G04030.3	236	106	1	2	234	11	246	53.81	2e-62	235
AfisC4G05663	AT3G04030.2	236	107	2	2	234	11	245	52.97	7e-60	227
AfisC4G05663	AT5G18240.4	209	96	0	21	229	30	238	54.07	1e-57	220

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	38	89	35.9	5.4e-09
PF14379.3	Myb_CC_LHEQLE	Family	137	183	70.9	4.8e-20

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003913	F	DNA photolyase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network