Detail information of AfisC4G05738


Location
GeneChrStartEndStrand
AfisC4G05738chr410559995181056021112+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020246790.11.1e-213LOW QUALITY PROTEIN: serine/threonine-protein kinase-like protein CCR4
SwissprotQ9FIJ6.12.1e-113Protein CRINKLY 4 RELATED 4
trEMBLA0A804IDG94.1e-191(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G47850.142.287e-143 505CCR4CRINKLY4 related 4

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag301431.t1
Allium fistulosumAfisC4G05738
Allium sativumAsa5G04736.1; Asa5G04737.1
Arabidopsis thalianaAT5G47850.1
Oryza sativaLOC_Os04g35890.1; LOC_Os08g01830.1; LOC_Os11g11490.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain7311025157.43.9e-46

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0000049FtRNA binding
GO:0005829Ccytosol
GO:0004672Fprotein kinase activity
GO:0005643Cnuclear pore
GO:0008536FRan GTPase binding
GO:0006396PRNA processing
GO:0006979Presponse to oxidative stress
GO:0009506Cplasmodesma
GO:0009628Presponse to abiotic stimulus
GO:0009860Ppollen tube growth
GO:0009908Pflower development
GO:0010014Pmeristem initiation
GO:0015932Fnucleobase-containing compound transmembrane transporter activity
GO:0016363Cnuclear matrix
GO:0019901Fprotein kinase binding
GO:0031410Ccytoplasmic vesicle
GO:0042221Presponse to chemical
GO:0044710Psingle-organism metabolic process
GO:0048768Proot hair cell tip growth
GO:0050794Pregulation of cellular process
GO:0051716Pcellular response to stimulus
GO:0071528PtRNA re-export from nucleus

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14288XPOT; exportin-TEC:- RNA transportko03013

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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