result

Gene information

Detail information of AfisC4G05827

Location

Gene	Chr	Start	End	Strand
AfisC4G05827	chr4	1070007591	1070010018	+

Sequences

CDS

>AfisC4G05827
ATGAAAAAACAAAATATTAGTCTCCTCTTCACATTCTTCATCTCACTTCTCTCATCTTCAGCCTCCCAACAACCATACCAAAGAAACAACCAAAACAAATGCGAGGTCGTCGGAGTCTCCACGGCCGGCTACACTTGCAACCTCTCCAACTCCGACCCCCAAACCTGCAACTCCTTCTTATCATTCCGCTCCCAAACAAATTATCAAACGCCCCTCCAAATCTCAAACCTCTTAACCTCAAACCCTTCTTCAATCGCCAAACTCAACGAAGCCCCCTCCAACAATTCAACCATACCCCTCGACAATATAGTCCTGATTCCAACCACCTGCAACTGTAGCAACGGATTCTACCAACATAACTCTAATTACGTCGTCCATATTCAAGGTGAGACTTACTTTACTATCGCTAATGACACTTACCAAGGCTTAACCACCTGTCAAGCTTTAATCAATCAGAACAGGATCAAAGAAGGACAGATTTTCGCTGGAGATAATATATTAGTCCCATTAAGGTGCGCATGCCCAACTAAGAATCAAACGGAGCTCGGATTTAAATTCTTGCTAACTTACATAGTCGCCCCGAATGATATCGTGTATGACATTTCCCAAAAGTTTGGTGCTGATTCCAGTACTGTTTTGGCTGCTAATGAGTTATCGGATTCCGATACCATTTTCCCCTTTACCACTCTTTTGATCCCATTGAAGAAAGAACCTACTGTAGATCAGATATCCGCTCCACCTCTATCTGCTCCGAGCCCCTCGGGTACTGCTGCAGACACCCCACCGACATCTGGTGGTGCCTCTAGCAAGAAATGGGTAGCTGTTGGAGTCGCAGTAGGAGTAGTTATTCTGGTCTTACTTGCTTTAACAGGTTGGTATTGCTGTTGTTTTAAGCGTGCACGTAAAATGCACGGTGAATTGCCTATTGACATTAGAAGTAAAGTAGGAGTGGAGGACGATTCGACTAAGCATGGTGCTTCATCGAGTTTTGTGTCGAGCGAGGTTCGTAACTTCATCGAGTCATTAACGGTATACAAATTTAGAGAACTAGAGAAAGCTACAAATTACTTTGGAGAAGAGTCTAGGATAAAAGGCTCGGTGTACCGAGCAATGATCAACAAAGACAAGGCTGCAGTTAAAAGACTGAAAGGAGACGTGTCGAACGAGATAAAGATACTTAAACAAATCAACCATTCCCACATAATTAGACTCTCGGGCTTTTGTGTGCATGGAGGCGACACTTATTTTGTATATGAGTTCGCTGAGAATGGTTCTCTAGCAGACTGGATTCATGGTAAGAAAGACTTAAGTTGGAGACAACGAGTTATGGTTGCTTATGACGTAGCGGATGGGTTGAACTATTTGCATAACTACACGAACCCACCTTACGTACATAAGAACCTGAAGAGCAGTAATATATTGATGGATGGTGAGTTTAGAGGGAAGATATCGAATTTTGGATTGGCCAGAAGGCTTGAAGAGCACGAGGAAATGGCTCAATTGACAAGGCATGTGGTGGGTACACAAGGGTACATGGCGCCTGAGTATTTGGAGCATGGGCTTATAACACCGAAGCTCGATGTGTTTGCTTTTGGAGTTGTGTTATTGGAGCTTTTATCGGGTAAAGAAGCTACTTATAACAAGGACAGTGAGGATGTAGAAGTAATGTTGTGGGTGGAGATAGGGAAAGTGATGGCTGGAGAAGATAAGAAGGGTGGTTTGAAAGGGTTTATGGATCCTTGTTTGGAGAATGAATATAGCTTGGATTTGGCTTTTGCAATGGCAGAGCTAGCGAGTAGATGTGTGAGTAAGGAAGCGGGTACTAGACCCGCAATGGCGGAGGTGTTTATGTCTCTTTCGGCCCTTTATAATTCGACGTTGGAGTGGGATCCTTTTAATGTTGGGAATTCAGGGTCAATGATTCATGGAAGGTAG

Protein

Gene

>AfisC4G05827
CAAAAAATGTTAGTCTACTTCTCCCGTTTATATAGTCAACTTCATCTTCTTCCTCGCAAACAAATATACGAAAACAAATCAATCAAACAAACTTGTATTTGGATACAAAACCAAAATGAAAAAACAAAATATTAGTCTCCTCTTCACATTCTTCATCTCACTTCTCTCATCTTCAGCCTCCCAACAACCATACCAAAGAAACAACCAAAACAAATGCGAGGTCGTCGGAGTCTCCACGGCCGGCTACACTTGCAACCTCTCCAACTCCGACCCCCAAACCTGCAACTCCTTCTTATCATTCCGCTCCCAAACAAATTATCAAACGCCCCTCCAAATCTCAAACCTCTTAACCTCAAACCCTTCTTCAATCGCCAAACTCAACGAAGCCCCCTCCAACAATTCAACCATACCCCTCGACAATATAGTCCTGATTCCAACCACCTGCAACTGTAGCAACGGATTCTACCAACATAACTCTAATTACGTCGTCCATATTCAAGGTGAGACTTACTTTACTATCGCTAATGACACTTACCAAGGCTTAACCACCTGTCAAGCTTTAATCAATCAGAACAGGATCAAAGAAGGACAGATTTTCGCTGGAGATAATATATTAGTCCCATTAAGGTGCGCATGCCCAACTAAGAATCAAACGGAGCTCGGATTTAAATTCTTGCTAACTTACATAGTCGCCCCGAATGATATCGTGTATGACATTTCCCAAAAGTTTGGTGCTGATTCCAGTACTGTTTTGGCTGCTAATGAGTTATCGGATTCCGATACCATTTTCCCCTTTACCACTCTTTTGATCCCATTGAAGAAAGAACCTACTGTAGATCAGATATCCGCTCCACCTCTATCTGCTCCGAGCCCCTCGGGTACTGCTGCAGACACCCCACCGACATCTGGTGGTGCCTCTAGCAAGAAATGGGTAGCTGTTGGAGTCGCAGTAGGAGTAGTTATTCTGGTCTTACTTGCTTTAACAGGTTGGTATTGCTGTTGTTTTAAGCGTGCACGTAAAATGCACGGTGAATTGCCTATTGACATTAGAAGTAAAGTAGGAGTGGAGGACGATTCGACTAAGCATGGTGCTTCATCGAGTTTTGTGTCGAGCGAGGTTCGTAACTTCATCGAGTCATTAACGGTATACAAATTTAGAGAACTAGAGAAAGCTACAAATTACTTTGGAGAAGAGTCTAGGATAAAAGGCTCGGTGTACCGAGCAATGATCAACAAAGACAAGGCTGCAGTTAAAAGACTGAAAGGAGACGTGTCGAACGAGATAAAGATACTTAAACAAATCAACCATTCCCACATAATTAGACTCTCGGGCTTTTGTGTGCATGGAGGCGACACTTATTTTGTATATGAGTTCGCTGAGAATGGTTCTCTAGCAGACTGGATTCATGGTAAGAAAGACTTAAGTTGGAGACAACGAGTTATGGTTGCTTATGACGTAGCGGATGGGTTGAACTATTTGCATAACTACACGAACCCACCTTACGTACATAAGAACCTGAAGAGCAGTAATATATTGATGGATGGTGAGTTTAGAGGGAAGATATCGAATTTTGGATTGGCCAGAAGGCTTGAAGAGCACGAGGAAATGGCTCAATTGACAAGGCATGTGGTGGGTACACAAGGGTACATGGCGCCTGAGTATTTGGAGCATGGGCTTATAACACCGAAGCTCGATGTGTTTGCTTTTGGAGTTGTGTTATTGGAGCTTTTATCGGGTAAAGAAGCTACTTATAACAAGGACAGTGAGGATGTAGAAGTAATGTTGTGGGTGGAGATAGGGAAAGTGATGGCTGGAGAAGATAAGAAGGGTGGTTTGAAAGGGTTTATGGATCCTTGTTTGGAGAATGAATATAGCTTGGATTTGGCTTTTGCAATGGCAGAGCTAGCGAGTAGATGTGTGAGTAAGGAAGCGGGTACTAGACCCGCAATGGCGGAGGTGTTTATGTCTCTTTCGGCCCTTTATAATTCGACGTTGGAGTGGGATCCTTTTAATGTTGGGAATTCAGGGTCAATGATTCATGGAAGGTAGCATCTATTGTTGATGCATGTATGTATATGTATGTGTGTAATTGCTATATTGAGATTTATTGTGGTAGTTTGATCTAGGGATTTTGATTTGGGGTTTAGATATTGCAGCAAGAGATTGATGTAAGTGAAATTTAGCAATACATGAATCTTCATATTCGATGTTAATTAGGCTCAAAGTAGTTAAAATTGTATTCATGTTGTGATAATTGACACTTTATATAAAAAAAGAAAAATCTTCATTATTGTATAATTTATTTTAACTAAGGCACCCATTACTGGTTTATCCGTGCTAATAAACATACGTCATTTTTCAAAATTATTTTAATGAAGCTATGTATCCAAACGACACTTTATACCTCTTTGTAAGAAGGTTAAATTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010913816.1	2.7e-183	protein LYK5-like
Swissprot	O22808.1	3.1e-144	LysM-containing receptor-like kinase 5
trEMBL	A0A6I9QT82	1.9e-183	protein LYK5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G33580.1	46.86	6e-153	538	LYK5	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05827	AT2G33580.1	653	304	14	9	631	13	652	46.86	6e-153	538
AfisC4G05827	AT2G23770.1	632	334	16	8	630	8	608	40.82	5e-113	405
AfisC4G05827	AT3G21630.1	630	370	20	59	644	18	617	29.52	2e-65	247

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01476.17	LysM	Domain	128	169	13.9	0.039
PF01476.17	LysM	Domain	190	233	24.7	1.6e-05
PF00069.22	Pkinase	Domain	374	615	140.4	6.1e-41

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000904	P	cell morphogenesis involved in differentiation
GO:0002831	P	regulation of response to biotic stimulus
GO:0050832	P	defense response to fungus
GO:0004674	F	protein serine/threonine kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006468	P	protein phosphorylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0009888	P	tissue development
GO:0008061	F	chitin binding
GO:0009932	P	cell tip growth
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0031349	P	positive regulation of defense response
GO:0032101	P	regulation of response to external stimulus
GO:0042803	F	protein homodimerization activity
GO:0043621	F	protein self-association
GO:0044444	C	cytoplasmic part
GO:0044702	P	single organism reproductive process
GO:0045087	P	innate immune response
GO:0048588	P	developmental cell growth
GO:0048731	P	system development
GO:0048868	P	pollen tube development
GO:0071219	P	cellular response to molecule of bacterial origin
GO:0071323	P	cellular response to chitin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network