result

Gene information

Detail information of AfisC4G05836

Location

Gene	Chr	Start	End	Strand
AfisC4G05836	chr4	1071102208	1071104634	+

Sequences

CDS

>AfisC4G05836
ATGTTAGTCTACTCCTCTGTTTATATAGTCAACTTCATCTTCTTCCTCGTAAACAAATATACGAAAACAAATCAATCAAACAAACTTGGATTTGGATACAAAACCAAAATGAAAAAACAAAATATTAATCTCCTCTTCACAATTTTCATCTCACTTCTCTCATCTTCAGCCGCCCAACAACCATACCAAAGAAACAGGCAACTCCAATGCGACGTCGTCGGAGTCTCCACGGCCGGCTACACTTGCAACCTCTCCAACTCCGACCCCCAAACCTGCAGCTCCTTCTTATCATTCCGCTCCCAAACAAATTATCGAACGCCCCTCCAAATCTCAAACCTCTTAACCTCAAACCCTTCTTCAATCGCCAAACTCAACGAAGCCCCCTCCAACAATTCAACCATACCCCTCAACGATATAGTCCTGATTCCAACCACCTGCAACTGTAGCAACGGATTTTACCAACATAACGCTAATTACGTCGTCCATATTCAAGGTGAGACTTACTTAACTATCGCTAATGACACTTACCAAGGCTTAACCACCTGTCAAGCTTTAATCAATCAGAACAAGATCAAAGAAAGACAGATTTTCGCTGGAGATAATATATTAGTCCCATTAAGGTGCGCATGCCCAACTAAGAATCAAACGGAGCTTGGATTTAAATTCTTACTAACTTACATAATCACCTGGAATGATAACGTGTATGACATTTCCCACAAGTTTGGTGCTGATTTCAGGACTGTTTTGGCTGCTAATGGGTTATCGGATTCCGATACCATTTTCCCCTTTACCACTCTTTTGATCCCATTGAAGAAAGAACCTACTGTAGATCAGATATCTGCTCCACCTCTATCTGCTCCGAGCCCCTCAGGTACTGATGCAGACACCCCACCGACATCTGGTGGTGCCTCTACCAAGAAATGGGTAGCTGTTGGAGTCGCAGTAGGAGTAGTTTTTCTGGTCTTACTTGCTTTAACAAGTTGGTATTGCTGTTGTTTTAAGCGTGCACGTAAAATGCACGGTGAATTACCTATTGACATTAGAAGTAAAGTACAAGCGGAGGACGATTCGACTAAGCATGATGCTTCATTGAGTTTTGTGTCGAGCGAGGTTCGTAACTTCATCGAGTCATTAACAGTATACAAATTTAGAGAACTAGAGAAAGCTACAAATTACTTTGGAGAAGAGTCTAGGATAAAAGGTTCGGTGTACCGAGCAGTGATCAACAAAGACAAAGCTGCAGTTAAAAGACTGAAAGGAGACGTGTCGAACGAGATAAAGATACTTAAACAAATCAACCATTCCAACATAATTAGACTCTCAGGCTTTTGTGTGCATGAAGGAGACACTTATTTTGTATATGAGTTCGCTGAGAATGGTTCTCTAGCAGACTGGATTCATGGTAAGAAAGAGTTAAGTTGGAGACAACGAGTTATGGTTGCTTATGACGTAGCGGATGGGTTGAACTATTTGCATAACTACACGAACCCACCTTACATACATAAGAACCTGAAGAGTAGTAATATATTAATGGATGGCGAGTTTAGAGGGAAGATATCAAATTTTGGATTGGCCAGAAGATTTGAAGAGGACGAGGAAATGGCTCAATTGACAAGGCATGTGGTGGGTACACAAGGGTACATGGCGCCTGAGTATTTGGAGCACGGGCTTATAACACCGAAGCTCGACGTGTTTGCTTTTGGAGTTGTGTTATTGGAGCTTTTATCGGGTAAAGAAGCTGCTTATAACAAGGACGGTGAGGACAAAGAAGTAATATTGTGGGTGGAGATAGGGAAAGTGATGGCTGGAGAAGATAAGAAGGGTGGTTTGAAAGGGTTTATGGATCCTTGTTTGGAAAATGAATATAGCTTGGATTTAGCTTTTGCAATGGCAGAGCTAGCGAGTAGATGCGTAAGTAAGGAAGTGGGTACTAGACCTGCTATGGCGGAGGTGTTTATGTCTCTTTCGGCCCTTTATAATTCGACGTTGGAGTGGGATCCTTCGGATGTTGGGAATTCAGGATCAATGATTCATGGAAGGTAG

Protein

Gene

>AfisC4G05836
AAAATATGTTAGTCTACTCCTCTGTTTATATAGTCAACTTCATCTTCTTCCTCGTAAACAAATATACGAAAACAAATCAATCAAACAAACTTGGATTTGGATACAAAACCAAAATGAAAAAACAAAATATTAATCTCCTCTTCACAATTTTCATCTCACTTCTCTCATCTTCAGCCGCCCAACAACCATACCAAAGAAACAGGCAACTCCAATGCGACGTCGTCGGAGTCTCCACGGCCGGCTACACTTGCAACCTCTCCAACTCCGACCCCCAAACCTGCAGCTCCTTCTTATCATTCCGCTCCCAAACAAATTATCGAACGCCCCTCCAAATCTCAAACCTCTTAACCTCAAACCCTTCTTCAATCGCCAAACTCAACGAAGCCCCCTCCAACAATTCAACCATACCCCTCAACGATATAGTCCTGATTCCAACCACCTGCAACTGTAGCAACGGATTTTACCAACATAACGCTAATTACGTCGTCCATATTCAAGGTGAGACTTACTTAACTATCGCTAATGACACTTACCAAGGCTTAACCACCTGTCAAGCTTTAATCAATCAGAACAAGATCAAAGAAAGACAGATTTTCGCTGGAGATAATATATTAGTCCCATTAAGGTGCGCATGCCCAACTAAGAATCAAACGGAGCTTGGATTTAAATTCTTACTAACTTACATAATCACCTGGAATGATAACGTGTATGACATTTCCCACAAGTTTGGTGCTGATTTCAGGACTGTTTTGGCTGCTAATGGGTTATCGGATTCCGATACCATTTTCCCCTTTACCACTCTTTTGATCCCATTGAAGAAAGAACCTACTGTAGATCAGATATCTGCTCCACCTCTATCTGCTCCGAGCCCCTCAGGTACTGATGCAGACACCCCACCGACATCTGGTGGTGCCTCTACCAAGAAATGGGTAGCTGTTGGAGTCGCAGTAGGAGTAGTTTTTCTGGTCTTACTTGCTTTAACAAGTTGGTATTGCTGTTGTTTTAAGCGTGCACGTAAAATGCACGGTGAATTACCTATTGACATTAGAAGTAAAGTACAAGCGGAGGACGATTCGACTAAGCATGATGCTTCATTGAGTTTTGTGTCGAGCGAGGTTCGTAACTTCATCGAGTCATTAACAGTATACAAATTTAGAGAACTAGAGAAAGCTACAAATTACTTTGGAGAAGAGTCTAGGATAAAAGGTTCGGTGTACCGAGCAGTGATCAACAAAGACAAAGCTGCAGTTAAAAGACTGAAAGGAGACGTGTCGAACGAGATAAAGATACTTAAACAAATCAACCATTCCAACATAATTAGACTCTCAGGCTTTTGTGTGCATGAAGGAGACACTTATTTTGTATATGAGTTCGCTGAGAATGGTTCTCTAGCAGACTGGATTCATGGTAAGAAAGAGTTAAGTTGGAGACAACGAGTTATGGTTGCTTATGACGTAGCGGATGGGTTGAACTATTTGCATAACTACACGAACCCACCTTACATACATAAGAACCTGAAGAGTAGTAATATATTAATGGATGGCGAGTTTAGAGGGAAGATATCAAATTTTGGATTGGCCAGAAGATTTGAAGAGGACGAGGAAATGGCTCAATTGACAAGGCATGTGGTGGGTACACAAGGGTACATGGCGCCTGAGTATTTGGAGCACGGGCTTATAACACCGAAGCTCGACGTGTTTGCTTTTGGAGTTGTGTTATTGGAGCTTTTATCGGGTAAAGAAGCTGCTTATAACAAGGACGGTGAGGACAAAGAAGTAATATTGTGGGTGGAGATAGGGAAAGTGATGGCTGGAGAAGATAAGAAGGGTGGTTTGAAAGGGTTTATGGATCCTTGTTTGGAAAATGAATATAGCTTGGATTTAGCTTTTGCAATGGCAGAGCTAGCGAGTAGATGCGTAAGTAAGGAAGTGGGTACTAGACCTGCTATGGCGGAGGTGTTTATGTCTCTTTCGGCCCTTTATAATTCGACGTTGGAGTGGGATCCTTCGGATGTTGGGAATTCAGGATCAATGATTCATGGAAGGTAGTACTTCTTGTCGATGCATGTATGTGTGTAATTGCTATATTGAGATTTATTGTAGTAGTTTGATCTAAGGATTTTGATTTGGGGTTTAGATATTGCAGCAAGAGACTGATGTAAGTGAAATTTAGCAATACATGAATCTTCATATTCGAAGTTAATTAGGCTCAAAGTAGTTAAAATTGTATTCATATTGTGATAATCGACAATTTATAAAGAAAATCTTCATTATCATATAATTTAACTTATGAGGCACCCATTACTGGTTTATCTGTGTTAATAAACTTGGGTAATTGTTCAAAATTATCTTAATGAAGCTATGTATCCAAATGACACTTTATACTTCTTTGTAGGGAGATTAAATTATGAAGCGAAGAGAAATGGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010913816.1	3.9e-188	protein LYK5-like
Swissprot	O22808.1	1.1e-147	LysM-containing receptor-like kinase 5
trEMBL	A0A6I9QT82	2.8e-188	protein LYK5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G33580.1	46.61	4e-154	542	LYK5	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05836	AT2G33580.1	663	310	14	45	676	13	662	46.61	4e-154	542
AfisC4G05836	AT2G23770.1	638	339	16	41	668	5	610	40.28	2e-114	410
AfisC4G05836	AT3G21630.1	589	352	19	117	680	62	617	30.39	3e-64	243

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01476.17	LysM	Domain	226	269	20.7	0.0003
PF00069.22	Pkinase	Domain	409	651	142.2	1.8e-41

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0002831	P	regulation of response to biotic stimulus
GO:0050832	P	defense response to fungus
GO:0004674	F	protein serine/threonine kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006468	P	protein phosphorylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0008061	F	chitin binding
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0031349	P	positive regulation of defense response
GO:0032101	P	regulation of response to external stimulus
GO:0042803	F	protein homodimerization activity
GO:0044444	C	cytoplasmic part
GO:0045087	P	innate immune response
GO:0051704	P	multi-organism process
GO:0071219	P	cellular response to molecule of bacterial origin
GO:0071323	P	cellular response to chitin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network