result

Gene information

Detail information of AfisC4G05935

Location

Gene	Chr	Start	End	Strand
AfisC4G05935	chr4	1092982339	1092984899	+

Sequences

CDS

Protein

Gene

>AfisC4G05935
TTAATATTGTTTTATTTCCTCTTCACCAAAGGCCAACCTCCAATCCCTAATCTTCTTGCCTCCTCAAATCAAAAACCGCCATCTGTCCACGGAAAATCCAAATTTTCTATTTTTAGAAATAAACTATTTATCCGTGGCTTCTAGGTCTCCACGTCACCCCTTTTGCTCCCGTCACCTCCATTAACTTCACCTTTCTTCCCTCAAATAGAAGTTAGAAACCAAACCAAGCTCCATAGCATAATACATAACAAAAAAAAATGGCGGTAAACTACTGGGGGTTAACAGCAAAGCACTGCGCCAATTGCGTCTCATCTCCTGCCGTCATGTACTGCAGAACCGACGCCACCTACCTCTGCAGCACGTGCGAAGCGCGATCCCACTCGTCGCACGTGCGCGTGTGGCTGTGCGAGGTCTGCGAGCAGGCGCCGGCGGCTGTGACGTGCAAGGCCGACGCGGCGACGCTGTGCGTTACGTGCGACGCGGACATCCACGCTGCGAACCCGCTGGCTAGGAGGCACGAACGGGTGCCAGTGGTACCGGTGGGGAATCCGACGGTGCAGGTTAAGGAGGATCTGTTTGGCGAAGATGGAGACGGTGACACGTGGAAGGGGATGATGGTGGATTTGAACTGCTTCGGTGGATTCAGCAATGAATTAGTGGATCCGTATTTGGATTTGGATGGTAATGGGGATGGATTGGTGCCTGTCCAGGATAAGCATGTTTATGGGTACGGGTATGGGCAGGAGAAAGGGACGATGATGCCAAAAGGGACGGTGGATATTGATTTTGGAGCTGTTGGGAAAGGGGATGGTTATGGTTGTGGCCATGGTGGATATACAGTTGGAGTTCAGTCCATGAGCCATAGTACTACTGTAAGTTTATATACATACTAGAATAATTATTCTTTTCTTTTCTTTTTTAATAATCTTGAAGTATTCATAGCTTTACTGCTCTAGCAACAAATAATATTTTCAAATTTGCTCGTCATTTTACTTTAAAATTTTGAAATAAAATTGGCTAATCATGAGCTATCTCTGCGTCTAGTACTTTATATGATGTCCTTTTGAGTTCATGATTAATAATTTATTAATTGATTTATCAGCAAAACTGCAAAAGGCAGTTGGCAGTGGAAAGTGAAATCAACAACTCAATTCGAAGTAGGAAACTTCCTACTTAATTTTGCATCAAAAAATTTCCTCAAAGCGTGAATGATATGCTCTTTCTTGGCCACTACTAAAAGTGGCATACTTTTCTACTTAATTATAAAGAAACATACCTTTTTAAAAATTAGCAACCACGCTTTTAAGTTTGTTAAATTAAATCGTTCTATTGTTAAAAAAGTTGCCAAATGCACCGAATCATTGTATATCTTAGACTACTGGTTCAATAACCTCTTCATTCATTCTGAATTAAAGAAAACAATTTAATTCTTCAAATCATAATCCACTTTTGGACAGAAATAAATTTTCAAATCATCCATTATGAAGCGATGGACGGAACTTATATGTGTTATTATAGCTTTGCTTTTCATACGAACATGATTGATAGATTTTGATGTAGTTTAAGGTAGTAGGGGTATCCATAAAACCTATAAAATTTTGCATGAACTACACTAAATTATCCCTCCTAATTTATGAATTACTTTCTTTGGTCTTTCGACTCTATATTGTAAGGTGAATCTTGAAAGCTATAAAAGATCTCCGTTTAAGCTGTACATAAGACTCCCATCAAGTACCACTTTCGCTAGAATTTCACAAGTACATATGAGATAATTGGAAGTATAATTTTGTTTACTCACTTTAAATTTAGTATTTGTTTCTCTTTTTTCACAGGCTCTCCGAGTTACACATATGTTTACTTTTCAAAACTCAGCATTAGAACTGGAAGTTGCATCCTGATGGCTTTTTTGCTGTATTTATTTTCTAAATAGAAATTAATGTAGTTAGAACATTTCTTATTTCGTTACGGTGTTAATATTTTTAGACATATGATGATAGGCATAATCAGTACTAGATTTTTTTCTTAAATAATGCATTTCCAGACATAGAACTCATATAATCTTTTGCATGTATAATAGGTATCTTCATCAGAAGCTGGAGTCGTGCCAGATAATAGCAGCTCCATGGCAGTAGCTGATGTATCCAACCCGTACAGCAGACCTTTGCCAAATCCAATGGATGCAATGGACAGAGAAGCAAGAGTTATGCGATACAGAGAGAAGCGAAAGAATAGAAAGTTCGAGAAGACCATACGCTACGCTTCCAGAAAGGCCTACGCAGAGACTCGGCCCAGGATTAAAGGAAGGTTCGCTAAACGGGTCGACAATGATTCTTATGCGGATCCAATGCACTCAGTGATTAATGCCTCCACTGCTTTCATGAATGATAGCGGGTATGGGGTTGTCCCATCCTTTTGATACAGGATCCCACATGGTGTATTATTTTGTAAAATGTAAGATTTTATTTTGTTTTCTGCATTTCGGTGTATATGGGAAAAGTAAACTTGCTTTTAAAATTTGCAAGATGATTATAATTTCAGTGCTTCAGTTTTCTCTTTTACTA

Functional annotation

Database	accession number	e-value	annotation
nr	ACT22759.1	1.2e-152	CONSTANS-like protein
Swissprot	Q9FHH8.2	1.5e-30	Zinc finger protein CONSTANS-LIKE 5
trEMBL	C7E143	8.8e-153	CONSTANS-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G24930.1	42.64	3e-60	229	ATCOL4;BBX5;COL4	CONSTANS-like 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05935	AT5G24930.1	387	120	13	8	317	45	406	42.64	3e-60	229
AfisC4G05935	AT3G02380.1	364	153	11	4	317	7	347	37.91	7e-56	214
AfisC4G05935	AT5G57660.1	357	153	8	6	317	15	355	40.06	8e-55	210

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	11	46	27.5	2.2e-06
PF00643.21	zf-B_box	Domain	47	92	26.5	4.8e-06
PF06203.11	CCT	Motif	243	285	65.7	2.6e-18

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0042802	F	identical protein binding
GO:0009641	P	shade avoidance
GO:0009909	P	regulation of flower development
GO:0010018	P	far-red light signaling pathway
GO:0010223	P	secondary shoot formation
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048576	P	positive regulation of short-day photoperiodism, flowering
GO:0048579	P	negative regulation of long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network