result

Gene information

Detail information of AfisC4G05986


Location
GeneChrStartEndStrand
AfisC4G05986chr411079833131108012792+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020269598.18.2e-282lysine-specific histone demethylase 1 homolog 2, partial
SwissprotQ9LID0.16.0e-229Protein LSD1-LIKE 2
trEMBLA0A6I9R8652.5e-264lysine-specific histone demethylase 1 homolog 2 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G13682.156.890.0 795LDL2LSD1-like2

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Ortholog group
SpeciesGenes
Allium cepag205792.t1
Allium fistulosumAfisC4G05986
Allium sativumAsa5G05015.1
Arabidopsis thalianaAT3G13682.1
Oryza sativaLOC_Os08g04780.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF04433.14SWIRMDomain6613438.11.3e-09
PF01593.21Amino_oxidaseDomain160586320.42.3e-95

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0005739Cmitochondrion
GO:0046872Fmetal ion binding
GO:0006306PDNA methylation
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006598Ppolyamine catabolic process
GO:0007474Pimaginal disc-derived wing vein specification
GO:0008131Fprimary amine oxidase activity
GO:0008134Ftranscription factor binding
GO:0008593Pregulation of Notch signaling pathway
GO:0009536Cplastid
GO:0009911Ppositive regulation of flower development
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0016575Phistone deacetylation
GO:0016647Foxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor
GO:0017053Ctranscriptional repressor complex
GO:0031056Pregulation of histone modification
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032453Fhistone demethylase activity (H3-K4 specific)
GO:0034720Phistone H3-K4 demethylation
GO:0043234Cprotein complex
GO:0044454Cnuclear chromosome part
GO:0048364Proot development
GO:0048477Poogenesis
GO:0051090Pregulation of sequence-specific DNA binding transcription factor activity
GO:0051100Pnegative regulation of binding
GO:0051568Phistone H3-K4 methylation
GO:0065008Pregulation of biological quality
GO:0070828Pheterochromatin organization
GO:0071478Pcellular response to radiation
GO:0090309Ppositive regulation of methylation-dependent chromatin silencing
GO:1901797Pnegative regulation of signal transduction by p53 class mediator
GO:2001021Pnegative regulation of response to DNA damage stimulus

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11450KDM1A, AOF2, LSD1; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylaseEC:1.14.99.66 Thermogenesisko04714

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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