result

Gene information

Detail information of AfisC4G06196

Location

Gene	Chr	Start	End	Strand
AfisC4G06196	chr4	1144790789	1144793254	-

Sequences

CDS

Protein

Gene

>AfisC4G06196
ATGATGTTAACAGGTTTTTGAGAAGCTTGGCCCAAGCTTATGTAATTTTCTACGCAAGAACTGTTATCACTCATTTTCATTGATCTTTTTCGTGGGATTGCAAGATAATTTTAGGAATGTATGGCATGTGTAATCAGTACTTCATCCGGTTGCATACTTTTAATTATTATTATTACTTTTCATTTTTATATATAAAGAAAGATAAAACCTTTTTTCTTTCCATATTTTTGAGAATTTATCATAGAGTAGGCTCTAGCAGATTTACTGTACATTGATTGATATTATGATTAAATAATAATCATTATTTTAAGGTTATTTGTTTTGCAATTTACATGCTTGCAGTTATGCATGAACTCCTTATTCATACTGATTTGAAGCTTGAAAATATACTTCTTGCTTCTTCACAGCTTATAGAAATACCTAATTCCAATATATAATTTATAAATATCCGATTGAGGAATTCAATCGATAAGTGTGTACATTGCTTATAACTCCATGCTCAAATATCAATTTCTTTTAAAATTCTAAAATGCTATGCATTTTAATACACCTGTTCTTTTTTTTTACTATTTTATTATCCTTGTATACATTGTTCATTGTGTTTATGCCTGCATATCATGCTTTCTAAAAAAATATATGATCATTTGTTTGAAACAGGTTTATCTCGGTCTTTTAAAGATGCTTTATACAAGAGGCTGCCCAAATCAAGTGCAATTAAGTTTATTGATTTCGGTAGCTGTACCTATAGCAATAAAGACCACAACTACATTGTCTCCACCAGGCACTACCGTGCACCTGAGGTCATATTGGACATGTTAACTTTCATTATACTTGTATAAATAATTATGCATTAAGCCCAGTTTAGCTAAGTATTTATGAGATGGATTTTGGGCTTGGATGGAGTTATCCTTGTGACATTTGGAGCATTGGATGTATTCTTGTGGGACTCTGCTCGGTATATAATCTGTATATTAGCTTTGTTGACCTTTTATAATAAATTATAAAATGATTACCCGAATTACTCATCTTTAATGAGTATTTTTAGGGAGAAGCATTATTTCAGACTCATGAAAACTTGGAGCACTTGGCAATGATGGAGAGAGTATTAGGTCCACTTCCTCATCACATCCTCAAAAGAGTCGAGTAAGTGCATAGCTGTATATAGGACTGGTTACACCCCTTAAGCTACACCTTTATATTTTATGGGTTGTGAAATTTGATTTTAAAATAATATCAAACTTTGTAGATATGTTCTTATATCATTCAAGATCATCTGAATCAAAGTTGTGATCATTTGGATAATCCTAAAATGTTCAAAAATAAAATTTCGAATTAATGATCGAATTGAACGCCTAATGTTAGCTTTAATATTTTAATATGGCTTCAATATTTGTGAAGTGAAGATTATGAATAGTACAAGAACATATCTACAAAGTTTGGTTTGTATAATTTTAACAAATATTGAGATGTATCGAAAGAGGTTGTAGTTTAAGGGGATGTGGCGTAAGGCGTGTAACCAAACTTTGTAAATATATAATGTGATGTAAATTCATGCGTGTTTCTCTATTTTTGGTTTCTTATATTTCTTTTTTTCCCATGGAAGTCCACATGCTGACAAATACATGAGGAGAGGCCGACTGAATTGGCCTAAGGGTGAAGTATCGCGAGAGAGTATGAAGGCTGCTCAAATATTTACCACATCTTCGGGTATTTCATGACCTTATACAAATATTGATTATTTTGATGAAGCTATTTCTAATCTTGCAGTAAAGTGAAATGATTTATTTTCTGCATGGTACCCTTTTAACTTGGCTAATATATATGTGGAGAGTTATCAAAACCCATGACCTTACACAACCGTCTTCTCTCTATCAATATTTGGTAATAATATGAAGGCTATTCTGGACGGGCTAATTTTATTTACGCTTTTCTTTTGTGCAAACAAAATATTTTCTGATTCGGTAATAAACCCAAGAAGATTATTCCTACTTGCATAAACCATTATTTATCAACCAATAGATTGATAAATAGAAACATTACTTTTGATATACTTGTAGCCACTGACTGGGGTATATATATCTGTGCATTTATTCATAAGAGCAACTTTATGTTGCAGAATTTGGTGATGCAACATGTAGACCACTCAGCAGAGGATCTGATAGATTTATTACAAGGTCTATTGAAATATGATCCTGCAAATAGAATGGAAGCAAATAAAGCTCTCAGACATCCTTCCTTTACTAGAATGCATAGAATATATTAAAGCCGAGAAATACTTTGATTTCAAGCATCGCTGGTGAAAGCAATAATGGAAGATGTTTGGAATGTAATTTCTTTTGTAAAATGGAACGTCTCTTTGTTGTACTGTATTTATTTGCACAGGCAACCTATTTAAAAAATTGTCTATTATGTTTGAAGGCTCTAAACTCATAATTGTATTTTATGAAAGCAGCACTCTAAGCTCAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245739.1	1.9e-77	serine/threonine-protein kinase AFC2 isoform X2
Swissprot	P51567.1	2.1e-68	Serine/threonine-protein kinase AFC2
trEMBL	A0A5P1E6X6	1.4e-77	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24740.1	61.19	9e-71	263	AFC2;AME1;FC2	FUS3-complementing gene 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06196	AT4G24740.2	201	58	1	7	207	142	322	61.19	5e-71	263
AfisC4G06196	AT4G24740.1	201	58	1	7	207	245	425	61.19	9e-71	263
AfisC4G06196	AT3G53570.4	204	52	4	6	207	262	445	63.73	3e-69	258

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	21	205	68.9	3.8e-19

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0005515	F	protein binding
GO:0016020	C	membrane
GO:0004325	F	ferrochelatase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005654	C	nucleoplasm
GO:0006397	P	mRNA processing
GO:0006783	P	heme biosynthetic process
GO:0010212	P	response to ionizing radiation
GO:0018108	P	peptidyl-tyrosine phosphorylation
GO:0043484	P	regulation of RNA splicing
GO:0044434	C	chloroplast part
GO:0044822	F	poly(A) RNA binding
GO:0045111	C	intermediate filament cytoskeleton
GO:0046777	P	protein autophosphorylation
GO:0048523	P	negative regulation of cellular process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network