result

Gene information

Detail information of AfisC4G06200

Location

Gene	Chr	Start	End	Strand
AfisC4G06200	chr4	1145600653	1145602252	-

Sequences

CDS

Protein

Gene

>AfisC4G06200
ATGGTATGAGCTGATTTGCTCAACTGTTCTTTTGATTTCTTCCCACGTTGTAGCAAATGTCTGACTGGCACAATCACGTCTTTTTACGTATAAATTTATTTTGAGATATACAAATAAATACTTACGGATGATTCCATTTCTATTTTCAATTAATAACATAATAAAATTACTAAATATGATTTCTGTTAGGGATAAATTTGCAATGCTAGCAGATACAAAACTAGGTTTCATTTTTAATTAGCAAACACTCCGGACTTGATATACTCATTTTATTTTAGAGAATCAATCCATATTTGTGCAAAACTAGGCTTATTTTTGTAATAAGTTTTTCACGAGACCTAAAATCGAAATAAATTATTTTTTGTGGCCTAGTTTGAAAGTTTGTCCCATTTTAGTAGATACATCATGAGTCGTATTAACCACTGTTGAATGTAATATACATGTGTTTAGAACAATTTTTATAGCACTAGGCATTTAGACAAATATTGAATAACAGAGGTCCAAATACTACAGATGAAGAAAAAAACAGGAGTCCAACAATGGTAGTGGTTGTAGACTTTTTGGCTTCCAGCTTATATAGAGTTCTAGCGCTGTAAAAGAAGCTACAACTCCAAAGGCTGCTCCACCGCAGATAAAAGAAGAAGATCACAATGAAATTGTTCAAGAATCACAACCTTCGAACAATGCAAATCAATTCGATGCTCCCACCATTAGCAATATGCTTGAAAATTTCAGCCTTAGATCATCTCATGAAACCCAGAGCCCACAAACTGGAAGCTGCACTAAGGTGGGTTCATGTATATTTTATTTGAGCGTTATTTCTTCACATGCAGTGTAAAATGCAATTTAAAATCTCAGGTTGAAACATGCATATATTTCTCTTTCTAACCACAATTTTTAGATTCCTATATGGTGGTAGAGAATTAATCAGTTAACATCTGTACCATGCATAAGTCTATATCATGCATTTACAATGATATTTTTTGATATAACAGGTGCACATGAACAGTATGGCAGTTGGGAGAGCGGTAGACTTGACAAAATACGACAATTACCATGACCTCTTATGCAAGCTTGAAGAAATGTTCAACATAGAAGGAGAATTGACTGGTGATATGAAGAAGTGGCAGGTTGTTTACACTGACGATGAAATTGACATGATGCTAGTTGGAGACGATCCTTGGCAGTAAGTATCATTTTTAATCACATCTTATGCAATTTTGGATTTTATTTCAGTATTTCTAAAAATGCCAACAAGGATGCTAGTTAGAGAAGACGAAAATGTTGGCTAATCAGGTGTCACATGTTTGAATCTCACAATCAACAGTTGTAGCTACTCATTCCGTGCATACTTCCAAAGTTTACAAGCATAAGTTTGTTTTTTTATACTTGGAGTAAATTTTGGTCAGTTGTAAAACCAAATCTATTGTTATTTTGTAATGAATTTTGCAGCATGGTAAGGAAAGTATACATATACACATATGAGGAGGCAAAACAGCTGTCAAAGGCTGAAACCATGGTATGCTCAGCCCTGCTCAGGTCAGTTCTTGTGTTTCTCTGCATCGACTTGGATAAGCTCGCACGTGCGAAATTGAGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247073.1	8.5e-42	LOW QUALITY PROTEIN: auxin response factor 7-like
Swissprot	Q6YVY0.1	6.8e-36	Auxin response factor 7
trEMBL	A0A8B7CAP7	1.8e-38	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G59750.1	56.83	1e-37	152	ARF1	auxin response factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06200	AT1G59750.3	139	55	2	29	163	506	643	56.83	1e-37	152
AfisC4G06200	AT1G59750.1	139	55	2	29	163	506	643	56.83	1e-37	152
AfisC4G06200	AT1G59750.2	139	55	2	29	163	503	640	56.83	1e-37	152

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	58	102	29.7	5.1e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009725	P	response to hormone
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network