result

Gene information

Detail information of AfisC4G06231

Location

Gene	Chr	Start	End	Strand
AfisC4G06231	chr4	1152317119	1152321402	-

Sequences

CDS

>AfisC4G06231
ATGAAGATATATGTGGCAGTGAAAGAGAAATTTAACGAAGGAAAGGAGAATTTTGGATGGCTTCTTCAAGAAAAAATGTTGTTGGGTCTTCAACAAATTAGTGATAAGAAGTTGATAATTATTATTACTCACGTTCATGTTCCACTCCAGAATATTCCTATTGAAAGCAGACAGCGCGAACAAGAGAAGACAGAAAAACGTCTGCAGAAGTATGTGAAATTGTGCTCAAAACAAAAGGTAGATTCTGAAATATTAGTGCATGTAGCAGGAAATGTAGCAAAAGGGCTTGTTGAGCTTATAGAAATACACAAGATTACCAAACTTGTAATGGGGGCAGCATCCAACCGGCGTTATAGAAGGAATATGAGCGTACCAAAATCACAAACCGCTTGCAGTGTGAATCTGTTTGCTCCGCAATCATGTGAAATATGGTTTGTTTGCAAAGGAAATACCGTATCCCGAAGGGAAAAACCATTATATGTATCTCAAACAGCAGAACGAGCTTTGCTTCAAAGCGTAAATCAACTTGCAACAAGTGCTAAGCTCCTAACTCTTGATGTATCACTGATAGCAACATTATTAGGATCACCAGCTTACACTGAAGAGCAGACAGAACAAGCTTCTGATTTTTTGGAGTTTAAGGAGTTGAAGCGAAAATATGATGACGCATTGAAGGAAATAGAAACACTGCACAGAAAAGATGGCTTGGTCAGTACAACCAACAACCAAGAAATACAGAATTTCACAGAGTTTCCGAAGCTTGAGATTGAACAAGCTACCCAAAATTTTAATGATGCTCTTAAGATCGGAGAGGGTGGATTTGGAAATGTTTATAAAGGGCAAATTCGGAACACGGTGGTGGCTGTAAAAAAATTGAATTCCGAAGGGTTGCAGGGTAAAAATGAATTCCATCAAGAGGTGGCTATACTAGGTCGGATTCGCCACCCAAACATCGTAACCCTAATCGGAGCATGCTCAGAAGAATGCACCATAATCTACGAATTCCTCCCAAACGGAAGCCTCGCCGACCGTCTCAAATGCAAGAGCAACACCCCACCTCTTTCGTACCATGCCCGAACCCGTATCGCCATTGAAATTTGCTCCGCTTTAATGTTCCTCCACTCAAGCAAACCCCACTCCATAGTCCATGGCGACTTGAAACCTGAAAACATCCTTCTTGATGCCAACCTCGTCAGCAAGCTCAGCGACTTCGGAATATGCCGCCTTCTACAGCAGTCCACTTCATCCGATACCACTTTCTACCACCAAACCGATAAACTCAAAGGAACGCTTCCTTACATGGATCCGGATTACTTGAACACAAATAAACTAACTAGGTCTTCAGATGTTCATTCTTTTGGGATTGTGATTCTTCAGTTGGTTACGGGGTTAAGGCCAAACAGGATTGTTGATACAGTGAAGAAAGCAGTGGAGAAGAATGCGGTACAAGCCATTGTTGATGGTAGTGCAGGGCCATGGCCTTATGTGCAGGTCAGTAAGCTTGTAGGTTTGGGTTTACGATGTTGTGAGATAGACCCGAAGAATAGACCAGCTCTTGTCGGAGAAGTGTGGGTTGTGCTTAAGAGTATGATGCCTGAGATTTTAGAGTTTGATGTGGATTATGGTGTTCATGTTCCTAATTACTTCATCTGTCCAATTACGATGAATATTATGAAAGATCCACATGTTGCGGCGGATGGTTTTACATACGAAGGAAAAGCAATCGAAGATTGGTTTATTGCAGGGAACAACACATCACCTGTGACTAACGCGCCACTTAATAACACAGATCTTATTAGAAATCTGTCTCTTCGGTATGATGTTGAAGTGTGGCTGCAAAAACGTAGGTGTACGTGA

Protein

Gene

>AfisC4G06231
TTCCCGGAAGTAATAGCTCAAGTCTAATTGAGAATGAAATTTATTCAACGAAGTGACTAAATAAATAATTCGATTGGGTACCGAAGTTTGAAGTTGTTATAACAAAGAAGAAACGTAATTGAATCATCTACTTAGATTTCACAAACTCTACCTTAATTGACAGAAAAATAAATATTTCCAGATGAAGATATATGTGGCAGTGAAAGAGAAATTTAACGAAGGAAAGGAGAATTTTGGATGGCTTCTTCAAGAAAAAATGTTGTTGGGTCTTCAACAAATTAGTGATAAGAAGTTGATAATTATTATTACTCACGTTCATGTTCCACTCCAGAATATTCCTATTGGTATGCACTCTCAGTCATCTTAAGTTAAACCTTTATTTTATTTTATTTTTTTATTTTTATTTTCCCTCTTCTTTCAGTTATCATGATATTTTTAGTAGGGTATATGGGTTAGCTTAGATTGGTTTTAGGCCCAAATCATTGTCGATCAACACAGTTGATAGATTTTTAAAATTTAGAACCACAACCAAAATTGATTTTACCGGACTTGAACATGTAATTTGGACCAATATAAAATTCAGATTCATTCATATTTGGGTTTGTGCTGTTCTTTTCACACCATATCATATTAGTTTATGTTTGATTGAATTCTTTTCATAAACAATAAATAATGTAATGCAAATATGTACAACATTTGTTTTTAACGTGGTTCATTAATGACAACAAGTGTTGATTGCGGATATGGAACTCGTTTAATCTCAGGATCATTGTGTGTGTAATTTTCGCTTTCTGATGACAAGAGTACACAATAAATAGTTTGTGTTTGATGTATTTATTTTCCATTTGAACTTCGGTTTATATGATTTATGCGCATGATGACTGAAAATATTTTCCACATGATATCTCTTTTATGCAGGTTCATTTTGATTTAAAAGGGCATGATCTTTCATACATATATAGTTGTACCTCGTTTAATTGTATATAGAATCTGAGTAACTTCTTTGTTCTTGATTACAGAAAGCAGACAGCGCGAACAAGAGAAGACAGAAAAACGTCTGCAGAAGTATGTGAAATTGTGCTCAAAACAAAAGGTTCATCTTTTGTTGTTTGTATTTGTACCCTTTTGCTTTTAGATAGCATTTGATACTGCGATTGGGTAGAAACACGCCCTTAATGCAAGGCAGGCTGGAAATAATGAAGTTAGATAATGACGCTGAAATTCTTATACGCAAATGCAGGTAGATTCTGAAATATTAGTGCATGTAGCAGGAAATGTAGCAAAAGGGCTTGTTGAGCTTATAGAAATACACAAGATTACCAAACTTGTAATGGGGGCAGCATCCAACCGGCGTTATAGAAGGTTTGTCAACCACTTGGCCCTATACTCATTTTTCTATTTAGATTAACCCTATGCAGAGCTATATTTTGCTATTTATGTAAAGGTTTGACCTTCATCGCATTTTTATCAAAATTCGAAGTTATAACCTTATAAATGCGACCAATGATATTTAACTAGCGTAAAAGCACAATGCACAATGTCTGTTAAATGTCGTGTAATTTCATCAGTCATAAAATCAACTAGAAATGTTGTGAACCAAAACAAACTTTCTCAACTTTCAGTGTTATGTAATGGTTGGACTTTTATTTTACACGCGCGCGCGCACACATATGTTTGTGTATAACATGTGGTTGAAATCGGGTAGGATTTGACGCAAAAAAAGAGGCGTAGCCAATCCTCGTCCTATGTATGTGTTTGTCATTTCTCTAACACCCGTTATACAAAGGTACTACTTAACTACTTAATGGATGTCAATTTTCATACTGTCTGTCATCCAAACGATTAAGGATTGGTATCTGTTATAAACAAATAATCTTAGAACGATTTCTATTTGCTTAATCATCTCAGCTCAGCTTTATACCAATGTTGAGTATCTGATTTACAGGAATATGAGCGTACCAAAATCACAAACCGCTTGCAGTGTGAATCTGTTTGCTCCGCAATCATGTGAAATATGGTTTGTTTGCAAAGGAAATACCGTATCCCGAAGGTGATCTTATGTCCAATTTACTACATGCAATAAAGTTATGAAATATCATGCTCAATTGTTTTCTATGTAATATAAGTCTTGAATATATGTATATTGTTTATATCTTTAAACCCACAGTAAGTTCCACAGCTTCTTACAGGGAAAAACCATTATATGTATCTCAAACAGCAGAACGAGCTTTGCTTCAAAGCGTAAATCAACTTGCAACAAGTGCTAAGCTCCTAACTCTTGTAAGATTCATCACTCCTCGAGATTCTTACATTTTAAGCCTCACTACAGGTTCAAATATAAAAGCAATAAATATTGATGAAGTCTGCTTTTATTCAGGATGTATCACTGATAGCAACATTATTAGGATCACCAGCTTACACTGAAGAGCAGACAGAACAAGCTTCTGATTTTTTGGAGTTTAAGGAGTTGAAGCGAAAATATGATGACGCATTGAAGGAAATAGAAACACTGCACAGAAAAGATGGCTTGGTCAGTACAACCAACAACCAAGAAATACAGAATTTCACAGAGTTTCCGAAGCTTGAGATTGAACAAGCTACCCAAAATTTTAATGATGCTCTTAAGATCGGAGAGGGTGGATTTGGAAATGTTTATAAAGGGCAAATTCGGAACACGGTGGTGGCTGTAAAAAAATTGAATTCCGAAGGGTTGCAGGGTAAAAATGAATTCCATCAAGAGGTAAATATGGTTGAATTCCAAAGATCACTGTTTTCCATGCAATCCTTTAGTATAAAATGAGCAATTCTACTGACAGTCGCTGATATAAAAAAAAAATATTGAGCTACCTTTTTAAATATACAATTTTCAAATCAAAATGAATATGGAATAGGAGAAATAAATAAGCTTTCATGTTATAATGATTATGCTACGTACAGAAGAATTGATACTTTCGCATACTTAAATGTCAATTTCGATTTTCAGTTTGAACTTCACAATCTTCATCTTGAATCCCATTTTGAAAAGATTAACGTGAGCATGCGAGGCTACTGAAATAAAAAAAAAACTGAAAAATCACAGTATTAAACATTAATGCAGGTGGCTATACTAGGTCGGATTCGCCACCCAAACATCGTAACCCTAATCGGAGCATGCTCAGAAGAATGCACCATAATCTACGAATTCCTCCCAAACGGAAGCCTCGCCGACCGTCTCAAATGCAAGAGCAACACCCCACCTCTTTCGTACCATGCCCGAACCCGTATCGCCATTGAAATTTGCTCCGCTTTAATGTTCCTCCACTCAAGCAAACCCCACTCCATAGTCCATGGCGACTTGAAACCTGAAAACATCCTTCTTGATGCCAACCTCGTCAGCAAGCTCAGCGACTTCGGAATATGCCGCCTTCTACAGCAGTCCACTTCATCCGATACCACTTTCTACCACCAAACCGATAAACTCAAAGGAACGCTTCCTTACATGGATCCGGATTACTTGAACACAAATAAACTAACTAGGTCTTCAGATGTTCATTCTTTTGGGATTGTGATTCTTCAGTTGGTTACGGGGTTAAGGCCAAACAGGATTGTTGATACAGTGAAGAAAGCAGTGGAGAAGAATGCGGTACAAGCCATTGTTGATGGTAGTGCAGGGCCATGGCCTTATGTGCAGGTCAGTAAGCTTGTAGGTTTGGGTTTACGATGTTGTGAGATAGACCCGAAGAATAGACCAGCTCTTGTCGGAGAAGTGTGGGTTGTGCTTAAGAGTATGATGCCTGAGATTTTAGAGTTTGATGTGGATTATGGTGTTCATGTTCCTAATTACTTCATCTGTCCAATTACGATGGTCTGTTTTTCTTTTATATATTTTGTGAATAGTAAATATCATAAGCTGATATTGTTGTTTGTTACAGAATATTATGAAAGATCCACATGTTGCGGCGGATGGTTTTACATACGAAGGAAAAGCAATCGAAGATTGGTTTATTGCAGGGAACAACACATCACCTGTGACTAACGCGCCACTTAATAACACAGATCTTATTAGAAATCTGTCTCTTCGGTATGATGTTGAAGTGTGGCTGCAAAAACGTAGGTGTACGTGACCGTGTAGTCGCTCCTTTTTTGCTTTTATACGTGTATCTTATTATTTGCCTACATACATTGTAAGATCTATTTTTTTTATAGTTAAAAAAAATGATTTAGTACATTTATAATGCAAGACTGCTTTGTGATGTTGAAACTAGGCAAAAATGTATTTGGTTTACTGAGAAAAACGAACTGATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249824.1	2.5e-141	U-box domain-containing protein 33-like isoform X1
Swissprot	Q5WA76.1	1.8e-109	Serine/threonine-protein kinase
trEMBL	A0A1R3L7E9	1.4e-133	E3 ubiquitin ligase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45910.1	50.37	4e-113	405		U-box domain-containing protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06231	AT2G45910.1	407	189	5	212	613	433	831	50.37	4e-113	405
AfisC4G06231	AT2G45910.1	174	89	3	2	159	46	209	33.91	3e-19	93.6
AfisC4G06231	AT3G49060.1	404	220	5	215	611	414	801	39.85	1e-86	318

Ortholog group

Species	Genes
Allium cepa	g480446.t1
Allium fistulosum	AfisC4G06231
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	268	519	154.4	3.1e-45
PF04564.12	U-box	Domain	545	616	62.2	3.5e-17

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0006952	P	defense response
GO:0004842	F	ubiquitin-protein transferase activity
GO:0005488	F	binding
GO:0016567	P	protein ubiquitination
GO:0043231	C	intracellular membrane-bounded organelle
GO:0016301	F	kinase activity
GO:0048522	P	positive regulation of cellular process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network