result

Gene information

Detail information of AfisC4G06258

Location

Gene	Chr	Start	End	Strand
AfisC4G06258	chr4	1156926164	1156928006	+

Sequences

CDS

>AfisC4G06258
ATGTTGTACCTCTGTCTCTTCACCTTTTTCTTCTTTTTTGATTACACACTTTGCAGGCAATTCTATGACCCAACTGATTGTTCTTCTCCTAAATTCTCTCCGGGTTCACTATACACGTGCAATGCTACTCGCCCTTCTTGCAAAACATACATAGTCTACAGATCACAAGAAGGTTTTAACAGTATATCAAAGATTTCAGAACTCTTCGGTATAAACAAAAATAAGGTATTGTTACTGAACAACATATCAAACCCATTTCAAACACTCGATGAAAACCGAGAAGTTCTTCTCCCAGCCACTTGCTTTTGCTCAAATGGATATTTCCGTTCTAATATTAGCTATACAGTTCCTTCAACCACGACATATGCTGAAATTGCTTGTAATGTTTTTGAAGGCTTGGTGAAATTGGTTACACTAGCCAAGGAAAACTCCTATCATCCTTTCAATCTTGATAAAGGGCTAGAGATACACGTGCCATTAAAATGTGCATGCCCTGATATAAATGATACTATGTATGGATATGAATATCTTGTCTCTTATCCGATTCAAGAACGAGATACCACAAACTTAGTAGCTAAAAAGTTCAATATAACTCCTGAAGAGTTGATAGCTCAAAACAGTCAAGGTGCATATGCGACTGTGATATCCAATACTACAATTTTAGTCCCTGTAAAAACCATGCCAACTATCAACTGGAGAATTTCTGATCCCAGTGATCAAAACCATAGCTTTATTCCTTTAAACCCAAGCACAAGAATGATGAATAGCATTTGGATCACCAGTAAGAAGAAGTATATCTTTAAAGTATCTGTTGCATTATTGATGATATTCGTCGTGTTTTCCACAATTGCCATATGTTACAAAGGTAGAAACAGAAGAAGACATGCAAAATTAGGGTACTTAAATGCAAAGCGCTCAACTTCTTCATGCTTATCGCCTGATATGCTGGCGGTTATGGCTAAATACTCTTTAAATAGTTATACTATAAAAGAATTAAACACTGCTACAAATAATTTTAGCAAGGAAATGAAGCTGGGTGCATCAGTTCATAAAGGAAGAATTGGTGACAGTGACTTGGTGATCAAGAAAATGGGATTTGGAGATGCAAGAAAAACAATCAGTATACACTCGAAGATCAATCATTCAAGCATAGTGAAATTAGATGGTGTTTGCTATGGAGATGATGAATTTTCTTCCTCATATTTGGTATTTGAGTATGCACGAAATGGGTCCTTGAGAAATTGCTTACAAAATAAAATGGAAGTTCTAACATGGCAAAAGAGGGCACAGATTGCTTTAGATGTTGCAATGGGTCTGCAGTATATACATCATTGCACAACCCCATCTTACATTCATATGAACATCAGTAGTAAGAATATATTGCTCACGGAGGAACATAGAGCAAAAATTGCGAATTTGGGTTCAAGCAATGATGTTATTGCTTCAGAAGGGTGGGTTGCACCAGAATACATTCGTTATGGATTTGTATCGACAAAGGTTGATGTTTTTGCCTTTGGGGTTGTCCTATTTGAGATTTTGTCAGCAAAAGAAGTCAGAGATAAAAACATCATTGAAAGATTGTGTTTTTCGAATGGCGAAGGAGGTGGTTTAAATGGTTGCTTTGATGAGCTTAAAATGTTAATAGATCCAAATCTTTATGATTACCCAATTGGAGATGCTCTGTGTATGACTGTCTTGGCTAAATGTTGCCTAGATGAAAATCCTATGCATCGTCCCTCTATGAATGACGTAATGAAGGTTCTGTCTAGAATGGTAAGCTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249435.1	3.4e-188	lysM domain receptor-like kinase 4
Swissprot	O64825.1	1.9e-66	LysM domain receptor-like kinase 4
trEMBL	A0A5P1E3H9	2.4e-188	Protein LYK5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G23770.1	30.37	2e-68	257	LYK4	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06258	AT2G23770.1	629	369	19	2	593	6	602	30.37	2e-68	257
AfisC4G06258	AT2G33580.1	609	358	17	38	593	50	645	30.38	5e-65	245
AfisC4G06258	AT3G21630.1	635	355	22	4	593	12	595	28.98	7e-55	212

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	371	586	100.7	7e-29

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0002237	P	response to molecule of bacterial origin
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0004672	F	protein kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0007166	P	cell surface receptor signaling pathway
GO:0010200	P	response to chitin
GO:0016310	P	phosphorylation
GO:0044403	P	symbiosis, encompassing mutualism through parasitism
GO:0044249	P	cellular biosynthetic process
GO:0044444	C	cytoplasmic part
GO:0044710	P	single-organism metabolic process
GO:0044763	P	single-organism cellular process
GO:0048364	P	root development
GO:0071310	P	cellular response to organic substance
GO:0071495	P	cellular response to endogenous stimulus
GO:0097367	F	carbohydrate derivative binding
GO:1901576	P	organic substance biosynthetic process
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network