result

Gene information

Detail information of AfisC4G06318

Location

Gene	Chr	Start	End	Strand
AfisC4G06318	chr4	1173242807	1173243959	-

Sequences

CDS

Protein

Gene

>AfisC4G06318
CCATCATCTCTAGGGTTTTATTTCCTCCCGAATTTATCTTCTCAATTCTCAATTCCACCCCAAACTCATAAAATCCAATAAAATGATGGATCCTTCTCCTTCCTCCAGCAACAGCAACAACAACCACAATCAAGACCATGACGTCACCACCGCCTCCATCGACTCAGTGGCAATCTTACCTCCACACAACCCTCAATTCCACCACCGTCTAATCATGCCCAAACCCGAACCGATCGACTTGTTCGCCGGCACTCCCAATACCCTTCCGATCGTCCAACCCCGTCAGCCCGCCAGAACCAAGGACCGCCACACCAAAGTCGAGGGCCGCGGCCGCAGGATCCGCATGCCCGCCGCCTGCGCCGCCCGCATCTTCCAACTCACTCGAGAGCTCAACCACAAATCCGACGGCGAAACAATTCGCTGGCTACTGGAGCACGCCGAACCGGCGATCATCGCCGCGACGGGCACCGGGACGGTACCGGCGATTGCAACGACTGTGGATGGGACTTTGAAGATTCCGACCACAGCGCCGGAAAGCGCTCCGGTAGGTTCGACGTCGTCGGGCGGCGGCGGTGGGGAGAAGAGGAGGAAGCTGCAGCCGACGAGGGCGGTTAGTGGGTCGGTTACGACGGGAATGGCGCCGTTGATGCCGATGACGTGGCCGCCGGCTGTGTGGATGGTGCCGCAGCCGGCGGCGGGGCAGGAGGTCATCTGGACGTTTCCAGCCATGAGGCCTGTGTATTCCCACGGGGAGGCGCAGGTAATGGAGGAGAAGGAGCAGCATGTGGCAGAGGATGAGGAAGAAGAGGATAATGATCAGAGATTTTCAGATAACAGCCAGTAATTTTGATTGATTAAGGTGGGATTCACTATGAGGTAAGACTAATTGAATACCTTAAGGGTTTCATTTTTAGTGTTGAGCTGATCTAGTTTAAAAACGTTTAGGCTGAATCTAGGGAAAGTAGGTAGAATGATTTGGTAATGTAGCAACCACCGCTGTATCGTATTCCTCTTTGGTTAGATTTAATGGTGTAATTGGTGATTATTTATCATGTAATTAGATTGAAGAAGTGTTTACGGATGTTTTGCGCCATAGAGAAATGTTCTGTAAACTTCAGGATTTTTGCGCCATAATTCAATGCCATACATGCGT

Functional annotation

Database	accession number	e-value	annotation
nr	AQR59355.1	3.9e-45	proliferation cell factor-like protein 3
Swissprot	A2YXQ1.1	2.5e-36	Transcription factor PCF2
trEMBL	A0A1S6EMY9	2.8e-45	Proliferation cell factor-like protein 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45680.1	54.82	4e-38	154	TCP9	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06318	AT2G45680.1	166	50	6	66	215	69	225	54.82	4e-38	154
AfisC4G06318	AT5G51910.2	130	38	3	66	188	52	179	63.85	4e-36	148
AfisC4G06318	AT5G51910.1	130	38	3	66	188	52	179	63.85	4e-36	148

Ortholog group

Species	Genes
Allium cepa	g238513.t1
Allium fistulosum	AfisC4G06318
Allium sativum	Asa5G05379.1
Arabidopsis thaliana	AT2G37000.1; AT5G51910.1; AT5G51910.2
Oryza sativa	LOC_Os04g11830.1; LOC_Os08g43160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	71	143	101.1	8.1e-29

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0007623	P	circadian rhythm
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010029	P	regulation of seed germination
GO:0010229	P	inflorescence development
GO:0010252	P	auxin homeostasis
GO:0031347	P	regulation of defense response
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0048364	P	root development
GO:0048467	P	gynoecium development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network