result

Gene information

Detail information of AfisC4G06368

Location

Gene	Chr	Start	End	Strand
AfisC4G06368	chr4	1184853570	1184856253	+

Sequences

CDS

Protein

Gene

>AfisC4G06368
GTTTGTACTGTAAATTTCACACATTTATTTATATCTTTACTGGGTGAGATAAGATTAAGTAAAGAAAAATGGTGAAAGGTCCTTGTTGTGGTAAGCAAATAACTGGAGGAGTAAAGAAAGGGCCATGGACTGAAGATGAAGATAAATTACTTGTTGATTTTATTCAAGCTAATGGCCATGGCAGCTGGAGATTGCTTCCTAAATTAGCAGGTCCTTTTCTTCTTCTTTTTTCACTCAATTAAAAGTTTTTGTTTTGCATGAACATCATGCAAAATTTTCTTTGTTCGTCTCACTATTTTTAGCATATGCTTTCTTTTATCATTCTTCATTATCTTATATATTATATGTGTACCTTAGTTACCGTAGTTAGGATTGTATATTTTTAATGTTTCGTTATCTAATAAAAACAAAGTTTTCTTATTCCTACATTATTTGCGTTTTGTAAATATACAATTAAATTCCAAGTTCCTAGCTAACCAGTTTCTCTCTTGCTATGTATTGGTAGATTGAGAAAAGTGCAAAAGCAGAAATGTACAAAACAACCAACACATAGCCTTTTAGGAAAAAAAAAAAGGGAAAAAGAAGATAGAAATGCTATTGGGATTATGAGGAACATTTTTTTTTCTTTTTGGTTTTTTGTAGTTTTTTTTTCTTAAAATTTTCTTTGAAAACTTGCTGGCTTCAGCAAAATAAACAAGGGAAGTAAACAGATTTTGTAATGAAGACTCTTTGACAGTCAGTATCACACATGTGCATGTGATTAGGTTCTTCTTTGCTTTTTTAAATTAATTTGCTTCATTAATGCTGAAAATACTTGACACGCATTCAACTTTAATGAACCAACCAGGTTAGCACTAATTCATTTACAGAGTTTTCAATCTAATAGGGTTGTAAATTTGATTTAGTTCTCATAATTTGGATAATTTGTAGGTTTATATGGGTCAAAAATCAGTTTTCGGTACTTAGTTAAACTAACTTTCAAAATGTTGAATTACTAGAACTTGTAAATTATGAATAACAAGTGCAGGATTGAAGAGGTGTGGCAAGAGCTGTAGGCTAAGATGGACCAACTATTTGCGACCTGATATAAAGAGAGGTCCATTTACACAAGACGAGCAAAAATCTATAATTCAGTTGCACGGCATCGTCGGTAACAAGTATATACATAAATCTACATTGGTGCTATATTAAACAGTCGCAATAAGATTATCATTCTGTTATATTTTTATGTCTCATTTATCCTGTGAGTGGATCCCATGTCAATAAAATCTCATTGCACAATCCTTTTCATTACTTGGTCCCATATGAACAAAATATCTGATCATTGCTATGCTCATTTAACCTTATGCAGCTATTAGGCTTTGAAACTTACAAATGCCACAAGAACAAGATATGATATCTTACCAGTCTTAATGTTTTTATCTTCAGTCAAACAAAGTACAAGCTCCTGAATATACAATGTACATAACTATTTTTATTCTAAATTCTGAACTCATTAGATTTGCTTGGTATGCTTATGGATATTGCTCAGGAGTATTTTTTTTTTTACCTGTTTAGGTAATTTATCAAAACTTGATGTATGTTTAGACCCGTTTCAAAACCACTTACAAACAACATATCACTTTCTGCATACCTGGAGCAAAAAGTGAATTTTTATACCAATCCTATTTGAAATAGAACTACTAATTTTCATTTATTTATTTTTATATATTTAGACATGTATATTTCAAACTGGACGAGCTCTATCAATGCACATATAATTTTGGAATAATGAATCCTATAGCTTATCACTATTAGAGTACTTGTAAGTTACTATTCAAAATAAGTTGTTGTCAAACGGTTCTGGTTTGTTTTCATACATAAAATCACTTACCATAATTTTTGTATTATAAAAAAACTAAATAGATGGTCAGCGATAGCTGCACAGCTTCCAGGAAGAACAGACAACGAAGTAAAGAACTACTGGAACACCCACCTCAAAAAACGTCTACAGCGCATGGGCATAGACCCCGAAACATACACCAATACATCAATCTCACCCTTCTCAGCAGCTCGCCACATGGCGCAATGGGAGAGCATCAGACTGGAAGCAGAGGCTCGCCTCACTCGTCAGTTACTCAACTCCTCCACCACCTCAGAATCCACTAACCACAACGAGGACAACAACAACTCTGAAGTTACTACAAAAGAACACAGCGATGTATTTTTAAGGATGTGGGACTCGGATATCGGCAAATCGTTCCGTGACAAAGTGAAGGTGGTCAATGAAGAGTCTGTGGTTTCTTCATCGAGCAACGTTAATGAGGTCGAGGAGAGCTCCGATGAAACTTTCAAGTTTTGCATGGATTTAGGAGGTGAAGATGACGAGTTTAGCATGTTTGAGAGTCAGATGGGGAGCTGTTTTTATTCATCTCTGTTTTACTCTGATCTCGATGAGGTTTCTCTTGAATATTAGATGTTTTTGTGACTTCGTTTGATTTGTAATATATGTATAGGTTTAGTTTGGAATTTGGGCGACTAGTTAAGTTTGTTACCAATGACTTGGTTCTATACATTTTGCTTCAAACTTTTTTGTCGTGTTCTATATGTAGAAACTTATCATGATCAAACATGATGTAATATGAGTACCACCTCCGTCTAGGCTAGAGTTGAAAGATACTTAACGTGGATTAATGATTTGTCAA

Functional annotation

Database	accession number	e-value	annotation
nr	PKU76346.1	1.8e-80	Myb-related protein Myb4
Swissprot	Q9M2D9.1	7.2e-66	Protein LATE MERISTEM IDENTITY 2
trEMBL	A0A2I0WL19	1.3e-80	Myb-related protein Myb4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G61250.1	55.19	8e-70	260	AtMYB17;LMI2;MYB17	myb domain protein 17

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06368	AT3G61250.1	241	85	5	1	234	1	225	55.19	8e-70	260
AfisC4G06368	AT5G15310.2	236	90	5	1	217	1	228	50.42	5e-60	227
AfisC4G06368	AT5G15310.1	208	72	4	1	189	1	205	54.81	1e-59	226

Ortholog group

Species	Genes
Allium cepa	g432517.t1
Allium fistulosum	AfisC4G06368
Allium sativum	Asa5G05337.1
Arabidopsis thaliana	AT3G61250.1
Oryza sativa	LOC_Os02g42870.1; LOC_Os04g45060.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	17	64	55.3	4.9e-15
PF00249.28	Myb_DNA-binding	Domain	70	115	53.0	2.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009506	C	plasmodesma
GO:0009611	P	response to wounding
GO:0009625	P	response to insect
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0080091	P	regulation of raffinose metabolic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network