result

Gene information

Detail information of AfisC4G06400

Location

Gene	Chr	Start	End	Strand
AfisC4G06400	chr4	1190107314	1190108528	-

Sequences

CDS

Protein

Gene

>AfisC4G06400
ATGGAGACTAAAAACATTACTAGTCATATAGACCACCAAGAGCCTCATGAATTTGTCACACTGAGTCTTGGTATGTTTTTTTTGGTGTACGAACATAGAAAGTGGACTTAAATTAATTGAACTTGCAATATTTTTTCCAGGTACAACGTACGTTGAGGGTAGAAAAGAAAAATTAAAGTCACTTAAATCTAAGGAAGACATAAGTACTGTTGATGAAAGTTTAACTCTTGGACTTGATGAATTTGTACATGCTAAAACGCAATGTGTTTTAAGTTCTAGACATGTGGAAACTAAAAGCCATGAAAATAAGGAGACATGGCCTCCTAGCAAAGTAGCCATACTGAGAAGTGAAGATGATGAAAGTAATGCTCTGTTGAACGATTATGCAAAGAGAGCTTGGGTTTCTGTTAGAGGAAGATGTGATGCCCCAACTGTATGCACCATGCATTTACTTTTTTTTCCTTTTCTTTTTGGTGCATGTGAGTTTATGTGCATGCATGAAGTTTCATTATTGTTTAGGCAATTATAGCTGTGTTATAGAGTTCCTCTATTTTCAGACTGAAAGTATAATGGTCATCTGCATCCTAGCTCATTTTGATTATGTATTTATGATATATTTGTCTTGAACTTTATGAACAAACTTTGATTTGTAAATGGGGATATATCAAAGAAAGATAGAAAATTATTTGTTAATATGTTCATTCAGTATAATAGTACATTGAAAGTTCAGATTATATATGGCTTATAAACAGATTTTATATTTTGAAAAACTTTACAGATGAACGATGGATGTCAATGGAGAAAATTTGGGCAAAAGGTATCAAAGGGAAACCCATGTCCTCGAGCTTACTATGGATGCACAGTTGCACCAAATTGTCCAGCAAGAAAGCAGGCAATAGTCTTTACACAAATAGTACATTCAAATCCTTTTTCAAAGCTTATTGCTTAATATTCAAGATATGATACTTTTTACAGGTGCGGAGATGTGAAAAGGACATGTTTGTACCGATAACTACATATGAAGACACACACAACCATATACTTCTAGTCTCAGCCACGGCCATGGCTTTCACCACAACTGTTGCTGCTTCAATGTTGTCTTCTGGATCCATTGTCTCAAGGCAAAATGCTACATTTTCCTTTGCATCCGAATTGGCTTCGACGAGCAGTAGCTTTCGAAACATAGGTCATGTCTGTTATTTAATTATAGGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022751909.1	1.5e-46	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5.1	2.0e-43	WRKY DNA-binding protein 72A
trEMBL	A0A6P5ZGN8	1.1e-46	probable WRKY transcription factor 72

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15130.1	53.25	8e-41	163	ATWRKY72;WRKY72	WRKY DNA-binding protein 72

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06400	AT5G15130.1	154	63	2	51	197	150	301	53.25	8e-41	163
AfisC4G06400	AT4G04450.1	116	48	0	107	222	276	391	58.62	4e-36	148
AfisC4G06400	AT1G68150.1	94	31	0	107	200	219	312	67.02	1e-35	146

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	123	180	77.2	8e-22

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0009685	P	gibberellin metabolic process
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0080169	P	cellular response to boron-containing substance deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network