result

Gene information

Detail information of AfisC4G06466

Location

Gene	Chr	Start	End	Strand
AfisC4G06466	chr4	1203661181	1203663347	-

Sequences

CDS

Protein

Gene

>AfisC4G06466
CTTTCTTCCTTTCAGCAACAAATATCTCTTTTTCTTATTACTTCTTTATGGATTTTGAACAATGGAAAAATTGTCAACAGATGGAGTTGCTTCAACCCTCAGCTAAAATACCAAAGATTAGCAATTTTTCAGCATTACCAGGTTCATTTTCATTTCATCCTTGCAGTATTATATGTATTGTATAATGGAAAAGATTGATTTATTCATAAATATCATCCGTGTTGTGTTCTTGATTTGTCGAAGGTATGGGGAGTTTGTTCAGTTGGGCTCAAATGCAAGAGCTGGAGCTGCAGGCTTTAATCTACCAGTACATGATGACTGAAGCTTCTGTCCCTTTAGAGTTGATTCTACACTTAAAAAATAGCTTTTTTAGTTCTCCTTCTTGCTATCATTACCAACATCTTCAGCCATTAAGTGAGCTCTCTTATCTAGCTTTTTTCCATACATCGTGTTTATGTATTGTAAACGTCAACTTTCTCTACCTCTTACTCGGATCTTTTGCTTATCACTGGGTATACAGGATATTTGTTGTGATTGGTTTGTTTTAGATACGAAGTTTTGGTTTAAATGAGAAGTTTGATTTCCTGGTTAATTTTAAATATGTTTGTTTACAATAAAAAAAGTCGTGCTTATCATCTTTTTTTCAGTGTATAAGCATTAAGAACTTCTGTAAGCACAACCAAAATGCCTATGTTTAATATGTAGGTATAAGTAATAAGAAAACTCTTATCGCAATATATGTTTAAGATTATTTTGATGGCGATCTTCATTTGTTTTTTAAATAAAAGGTTTATAGGTGAAGGCTGATTAGTTTTAAGTGTGTTTATTTACACTTAAAAATGTGAGCTTATCGAGCCTTTTTATAGTGTAATAGGCATTACGGATTTCAACAACTAGAACAAAAGAATGTAAGACACTTTAGACTGAGATTCTAGAGCTAATGTGTTCATGCTTTCGATTCTCGAAACATCAAAATGAGTGCTCCAACTTTTCTAGGTAAACAAAAAAGGTTAATGATGAATAGCTATGATATAATGGACCATTTTACGTTATCAATCGATGAAAGAAGACACGTTATATGCATATCGCTGAATTCAGATTTTGTGAACTTTCGGTTTAATGATCTAAGTTTCAAACATAATATTTTCAATAATGGAGCTGAATCTGCAAACTTCTTGCTCATCCCATATCCCGCTCGAGCAGAAACTTTGTACATGAATGAAGATGATGATTAATAGTTATAATCGATCCGAAAAGCGCCTATTACAATTAGTGTTCGATAACATCAAGCTTCTTTTGAGTTCTAATGGTATGATATATATAATACATGATAATTACTTGCAGCACCACAAGTAGGATACTGGGGAAAGTATGCAGTAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAGAGAGGTGGTACCCAACAAAAAATACTGCGAGAGACACGTGCATAGAGGCCGAAACCGTTCAAGAAAGCCCGTGGAAACCCCTCCCACACCTGCACTAGACATCTTCACTCAAAGGTTATACATACATCCATCATCATACGCCATTGCTTAAAACCATCCATCGGAAGTGACAACTACTTACTTCATTGCAGGGCTAGGACCGACAAAGAACCAAACAAATGCCTACAGATGCCACTATGCTTTGATTTCACTTCATCTGGTCTTAAAAAAGCGGAGAAGCCAGAAAACCAAGTGCTTATGCGATTCTTCGACGATAACTCGGAGAAAGAGCAGTCGAGTTCTGGTTTGTACTCGGCAAAACTATCGATATCGGTTCCAGAAAAGGGAGTGTCGGACTTTTCACTAAAACTATGTACCGGCAATGGTGGAGAAGGAGATGTGCATTGGACGGCTTCTTCGATGGGAGGTCCACTTGCTGAAGCGCTTCGTTCTAATATGTCTACTCCGGCAACTTCTACTGTGTTGCAGATGGATAATGGGTCCGTGTCTGAAGATGTTAGTACAACTGCGTGAATTGAATGAAAATGGTTCGTACTTGAAAAGTTTTGTTTATTTGTTTGTGCTGTTTTAGTGGCTCTATGCTTTGTATGTTGGTGATCCACTCGGAGCAAGCAGGACTGTTTTTAGTTCACTGGTTTGATATAATTTTGTACAATGTTTTGTTTGATTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010910363.1	1.4e-54	growth-regulating factor 3 isoform X2
Swissprot	Q9SJR5.1	4.3e-37	Transcription activator GRF3
trEMBL	A0A6I9QJ89	9.8e-55	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G52910.1	40.00	4e-42	168	AtGRF4;GRF4	growth-regulating factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06466	AT3G52910.1	305	105	10	33	270	79	372	40.00	4e-42	168
AfisC4G06466	AT2G36400.1	126	36	2	30	148	70	191	62.70	1e-39	160
AfisC4G06466	AT2G36400.1	117	45	4	180	270	276	390	37.61	3e-06	49.3

Ortholog group

Species	Genes
Allium cepa	g310380.t1; g57023.t1
Allium fistulosum	AfisC4G06466
Allium sativum	Asa5G05475.1
Arabidopsis thaliana	AT2G36400.1; AT3G52910.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	37	69	32.6	4.4e-08
PF08879.7	WRC	Domain	102	144	75.9	1.3e-21

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0006351	P	transcription, DNA-templated
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010114	P	response to red light
GO:0010218	P	response to far red light
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019222	P	regulation of metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network