result

Gene information

Detail information of AfisC4G06524

Location

Gene	Chr	Start	End	Strand
AfisC4G06524	chr4	1214685545	1214687654	-

Sequences

CDS

Protein

Gene

>AfisC4G06524
ATGAGCATTCTGGTACTTCCTATCAATTTCTTGACTATGCAAAAACAGTTTATATGCAAAATTTTATATTTTATAACCAACAGTTTTAGAACTTAACAGGATTATAACAAAAGTGCAAGTGCAAATTCTGTTCCCAAATCTGTGAGTTCAATGACTGAAGACGTTCAAACTTCTTCAATGATCAACGGCGACGAACATGCCCCAAAGGTGCAATTTCAATTTTTCAATGCAACTTAGTTGCAATTTGAACATATTCAGAACTTTATATATATATGCATTATATTTTTTGAATTTATCAGGCAAGAAAACCATATACAATTACTAAGCAAAGGGAAAGGTGGACAGAAGAAGAGCATAAGAAATTCACTGAAGCTCTTCGACGTTATGGTCGTGCATGGCGCCGCATAGAAGGTCTAATTGCTCATACTTGATACCAATTTCTATGTTTGTTGAAATCATGACTTGATTTTTGTTTGTTTATTTTTAATACAGAGTTTGTAGGTACAAAAACAGCAGTGCAGATTAGGAGTCATGCTCAAAAGTTTTTCTCAAAGGTAATATATATATATATATATATATATATATATATATATATATATATATATATTAAAAGAAGTATGATGCGCTAGTTGTTATTGATATAGTAGAGAAGATCAAAAAAGGTGGTATGAAAAATCTGGTTTTTAGGCAAAAAGGATTGTTTTGCCTGATGTAATATTCGCTCCCACTCTAATCAAGAGTTTGTTGCTTTCCAAAATGCAACAAAACGGAAAACGTACAATAGCGAAGTTTGAGGTTTTGTAAGAAGTTTATTCTCAAATGTTTAGACAAAAAATACTTCTACTTCTCTGTATAGATTGTTAATGGTTGCTTTCAACAGTTATAAGACACAACTTTTTGGCCAATGGTCAATAGCAAAAAATTGTAAAAAAGAATAAATTTAGTCATAAGCTATTCCTTTTCAGACTAAAAAAGAAAAAGAAAAAAAAAGCACTCGTATGCATTGTCACTTTTCCTTGGTTTCATGTAAATATTAGTAGCCAAATGAAATATTTTTATACATGTATAGACTTTGTGTCGGTGGTTGATATCTAATCTAGATAACTTAAACCTCTAATTTTATTACCAGATACTAAACTCATGGTATATGTGATATAGTTTCCTAAAAATGTAAAAGTCAACTGTGATTTTATTTACTCACTGTTGGATTCGATTTTCATAGACACTTGGTTTAATGACAATTTTAAGAAATAAACTCAAACTACGTGCAACTTGCCCTTTCTAGACCTGCTCAAGCTGATGTCTTGTGTATTATGTAGAGAATGATGATGATATATGTACATGTATACATATATACATATAAATACTTATGTTTTATACTACATTAGGTCGTTAAGGAATCGAAGGCAATAGAGATTCCTCCGCCTCGACCCAAAAGGAAGCCGGCTCATCCATATCCTCGTAAAGTTGGAAGTTTAACCACGGGCACTTTGGGCCATTCATGTTCACCAACCGAACTAGAAAACGGATCACCTACATCCATTTTAAATTCATTCACATGCGAAAATTTGTTCTACGTCTCCGAGTTCGCAAACCGATGTTCTTCTCCAACTTCTTCTGGTACTGGATCCAATGAAGAAGGAACATCTAGAATGGTACTCGAATTCTCATAATTTGATCTTCCATTGATTATTCTCATCTTGTTCATACATATGTTATCATTGTATACATATATAACCAGGAAGCTTCTGTTCCTTGCATAAAGCTGTTTGGAAAAACTGTTACAGTAGCTGATAAAGATAAGCCAGATATGACTCCTGATCATGATGATCATGTCAATAAAAGATCTAACCCAAAGCATTATCCAACTACAAGTAGTTTTCAGTTTCCTTGGTGGTCATGTTACAGTAACGTTCAGTTTCCTTTTGTGCATAAAATGAACTCGGGTACTGATTTAGCAATGAAGAGTGACGGTGTATTGAGAAATAACGGAGTTGAGGGGTTCATGGCGTATAAAAATTGTGTAGTGAGAAGAGAAGGACAAGAACCGGAAAGAGAGGATGATGATGATGAAGATGGAGATGATAAGTTGATAGAATTGAAGTTGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262219.1	2.4e-52	protein REVEILLE 2-like
Swissprot	F4K5X6.1	3.8e-39	MYB family transcription factor Circadian 1
trEMBL	A0A5P1EY72	3.5e-45	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G17300.1	51.20	2e-38	156	RVE1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06524	AT5G17300.1	209	66	5	32	205	36	243	51.20	2e-38	156
AfisC4G06524	AT5G37260.1	262	130	6	33	282	18	271	42.75	3e-37	152
AfisC4G06524	AT1G18330.1	297	135	6	36	286	35	325	37.04	5e-35	144

Ortholog group

Species	Genes
Allium cepa	g313522.t1
Allium fistulosum	AfisC4G06524
Allium sativum	Asa0G05940.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	51	94	48.4	6.8e-13

Gene Ontology

Accession	Ontology	Name
GO:0001190	F	transcriptional activator activity, RNA polymerase II transcription factor binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009845	P	seed germination
GO:0009909	P	regulation of flower development
GO:0010243	P	response to organonitrogen compound
GO:0010600	P	regulation of auxin biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0019904	F	protein domain specific binding
GO:0032922	P	circadian regulation of gene expression
GO:0042753	P	positive regulation of circadian rhythm
GO:0042754	P	negative regulation of circadian rhythm
GO:0043496	P	regulation of protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043966	P	histone H3 acetylation
GO:0048574	P	long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network