result

Gene information

Detail information of AfisC4G06546

Location

Gene	Chr	Start	End	Strand
AfisC4G06546	chr4	1221319049	1221320981	-

Sequences

CDS

>AfisC4G06546
ATGGAGTCATACGACAAAGTTGGCTGCAATAAAATGCCAAGCCTGCTTATTTTGATATGCATAATCATGTCTTCATTTGTTAACAATAATATTGCTCAAGCGAAGGTGACATGGAGTTTGAAGGCAGCAGAAGAGGCGGAGGCAGTAGCTAATATAAACTGTTCAGGGCATGGTAGAGCTTTTTTGGATGGAATTCTTTCAGATGGCTCTCCTAAATGCGAGTGCAATACTTGTTACACTGGTGCAGATTGCTCTCAGAAGATTTCAGGTTGCTCTGCGGATGTTGCCAGTGGCGATGGACTGTTTCTTGAGGAATACTGGCAGCAGCACAAGGAAAACAGTGCAGTGCTGGTTTCCGGATGGCACAGAATGAGCTACTTTTTCAACCCAGTTAGCAATTTCATATCTTTCGAGCTTGAAAAAACAATTAAAGAACTACACGAGATAGTGGGAAATGCTGCTGCAAAAGACAGGTACATTGTGTTTGGAGTAGGGGTGACTCAACTCATCCATGGATTGGTCATCTCTCTTTCACCAAATATGACTGCCACTCCTAGTGCACCACAAGCTAAAGTTGTTGCTCACGCCCCTTTTTATCCGGTGTTCAGAGAACAAACAAAATATTTTGACAAGAAAGGGTACGAGTGGAAAGGAAATGCAGCGAATTACGTTAACACTTCAACTCCTGAGCAGTTCATCGAGATGGTTACTTCACCTAACAACCCAGAAGGTCTGCTTCGCCATGAAGTAATCAAGGGATGCAAATCCATTTACGATATGGTTTACTACTGGCCTCATTACACCCCAATCAAGTACAAAGCCGACGAAGATATCATGTTGTTTACAATGTCTAAATACACTGGACACTCTGGTAGTCGATTTGGGTGGGCGTTGATAAAGGATGAAACCGTGTATAATAAGTTGTTGAATTACATGACAAAAAACACGGAGGGCACTTCTCGAGAAACACAGCTGCGATCGCTCAAAATTCTAAAAGAAGTTACAGCAATGGTTAAAACACAGAAAGGCACCATGCGCGACCTCAACACATTTGGTTTTCGGAAACTAAGAGAGAGGTGGGTAAATATCACTGCATTGCTCGATAGATCGGACAGATTCTCCTATCAAAAGCTTCCTCAAAGTGAATATTGCAATTACTTCAGAAGAATGAGACCTCCATCCCCATCTTATGCATGGGTGAAGTGTGAATGGGAAGAAGACAAAGATTGTTACCAGACATTTCAAAATGGACGTATCAATACTCAAAGTGGAGAGGGGTTCGAAGCAGGCAGTCGTTATGTGCGTTTGAGTTTGATCAAGACAAAAGATGATTTTGATCAACTCATGTACTATTTGAAGGATATGGTTGAAGCGAAGAGGAAGACTCCTGTCATCAAACAACTTTACAACGATCAGACCTCCCGCCGTCCATTCATTTAA

Protein

Gene

>AfisC4G06546
GTGGAACATTAAATATCCATAGCAAAGCTAATTAGCTATGGAGTCATACGACAAAGTTGGCTGCAATAAAATGCCAAGCCTGCTTATTTTGATATGCATAATCATGTCTTCATTTGTTAACAATAATATTGCTCAAGCGAAGGTGACATGGAGTTTGAAGGCAGCAGAAGAGGCGGAGGCAGTAGCTAATATAAACTGTTCAGGGCATGGTAGAGCTTTTTTGGATGGAATTCTTTCAGATGGCTCTCCTAAATGCGAGTGCAATACTTGTTACACTGGTGCAGATTGCTCTCAGAAGATTTCAGGTTGCTCTGCGGATGTTGCCAGGTTAATATTTCTCTGTTCTTCACAATACATGGTAGTTTAACTTTATATCAAACACACTGGACGATATTTAATGACATGCTTAAGGAATTGAATGATATATTGTATACACAGTGGCGATGGACTGTTTCTTGAGGAATACTGGCAGCAGCACAAGGAAAACAGTGCAGTGCTGGTTTCCGGATGGCACAGAATGAGCTACTTTTTCAACCCAGTTAGCAATTTCATATCTTTCGAGCTTGAAAAAACAATTAAAGAACTACACGAGATAGTGGGAAATGCTGCTGCAAAAGACAGGTACATTGTGTTTGGAGTAGGGGTGACTCAACTCATCCATGGATTGGTCATCTCTCTTTCACCAAATATGACTGCCACTCCTAGTGCACCACAAGCTAAAGTTGTTGCTCACGCCCCTTTTTATCCGGTAACTATATACATGTTTGTAAGTTAGGACTGCCTAGAGATAACTGTATATTACTTACGCATATCATTAACTTAATTTGAACAAATTAAATGATACAGGTGTTCAGAGAACAAACAAAATATTTTGACAAGAAAGGGTACGAGTGGAAAGGAAATGCAGCGAATTACGTTAACACTTCAACTCCTGAGCAGTTCATCGAGATGGTTACTTCACCTAACAACCCAGAAGGTCTGCTTCGCCATGAAGTAATCAAGGGATGCAAATCCATTTACGATATGGTTTACTACTGGCCTCATTACACCCCAATCAAGTACAAAGCCGACGAAGATATCATGTTGTTTACAATGTCTAAATACACTGGACACTCTGGTAGTCGATTTGGGTATGTCCACTTACTATTACCTCACATCTTTCTCTATCTATAATAAACATATTTAAGTTAATTAGTTGGTAACTCATACTTTAATTAATACCGTATTAAATTAGGTGGGCGTTGATAAAGGATGAAACCGTGTATAATAAGTTGTTGAATTACATGACAAAAAACACGGAGGGCACTTCTCGAGAAACACAGCTGCGATCGCTCAAAATTCTAAAAGAAGTTACAGCAATGGTTAAAACACAGAAAGGCACCATGCGCGACCTCAACACATTTGGTTTTCGGAAACTAAGAGAGAGGTGGGTAAATATCACTGCATTGCTCGATAGATCGGACAGATTCTCCTATCAAAAGCTTCCTCAAAGTGAATATTGCAATTACTTCAGAAGAATGAGACCTCCATCCCCATGTATGTATACCTGTATATTATTCTTTATTGAAAGATACACTATTATCGATTATGAACATATATAACAATGAAGCCTTAATCGCTGATGCATATGATGACAGCTTATGCATGGGTGAAGTGTGAATGGGAAGAAGACAAAGATTGTTACCAGACATTTCAAAATGGACGTATCAATACTCAAAGTGGAGAGGGGTTCGAAGCAGGCAGTCGTTATGTGCGTTTGAGTTTGATCAAGACAAAAGATGATTTTGATCAACTCATGTACTATTTGAAGGATATGGTTGAAGCGAAGAGGAAGACTCCTGTCATCAAACAACTTTACAACGATCAGACCTCCCGCCGTCCATTCATTTAACTACTCGTGTTAAGTATTGCTCTACTGTTATTGTTAGTGTAT

Functional annotation

Database	accession number	e-value	annotation
nr	AYN25507.1	1.4e-282	alliinase
Swissprot	P31757.2	8.3e-275	Cysteine sulphoxide lyase
trEMBL	A0A3G2I880	1.0e-282	Alliinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	42.30	8e-113	404		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06546	AT1G34060.1	461	244	8	15	463	6	456	42.30	8e-113	404
AfisC4G06546	AT1G34040.1	447	230	6	16	456	12	447	44.74	4e-110	395
AfisC4G06546	AT1G23320.1	384	221	9	80	455	13	383	36.98	6e-74	275

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	37	91	92.0	2e-26
PF04864.10	Alliinase_C	Domain	93	456	595.7	2.5e-179

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0004021	F	L-alanine:2-oxoglutarate aminotransferase activity
GO:0005773	C	vacuole
GO:0004838	F	L-tyrosine:2-oxoglutarate aminotransferase activity
GO:0009641	P	shade avoidance
GO:0009684	P	indoleacetic acid biosynthetic process
GO:0009723	P	response to ethylene
GO:0009958	P	positive gravitropism
GO:0010078	P	maintenance of root meristem identity
GO:0010087	P	phloem or xylem histogenesis
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0030170	F	pyridoxal phosphate binding
GO:0044425	C	membrane part
GO:0047312	F	L-phenylalanine:pyruvate aminotransferase activity
GO:0047654	F	alliin lyase activity
GO:0048467	P	gynoecium development
GO:0050048	F	L-leucine:2-oxoglutarate aminotransferase activity
GO:0050362	F	L-tryptophan:2-oxoglutarate aminotransferase activity
GO:0080022	P	primary root development
GO:0080097	F	L-tryptophan:pyruvate aminotransferase activity
GO:0080098	F	L-tyrosine:pyruvate aminotransferase activity
GO:0080099	F	L-methionine:2-oxoglutarate aminotransferase activity
GO:0080100	F	L-glutamine:2-oxoglutarate aminotransferase activity
GO:0080130	F	L-phenylalanine:2-oxoglutarate aminotransferase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network