result

Gene information

Detail information of AfisC4G06555

Location

Gene	Chr	Start	End	Strand
AfisC4G06555	chr4	1224928458	1224929795	+

Sequences

CDS

Protein

Gene

>AfisC4G06555
AAAAAAACAAGTCCATAATTAGCTCAAGTTGGTTTAAATAAAAAACGAAAAGCACAAGCCTTGAATAAAAGACTAAAAAAAAGGATGTTCCTCTCTCTCCACTCCTCCCTCTCTTCACTCCACACCTCTCTTATTTACAACTAATTCACTTCTCTTCCATCCAATATCCTGTAATTTACAGGGCGGACTCTTCCACACTATTTATATCCAAGCCACCTCTTATCCTCTCATATTTTCTTTTTATATATACTCGCACACCTTCCTCTTCTTCTAAAAGCTGTTCATATACCACCCACTTCTTCTTCTTCTTCCACCTCCTCCTTTTACTCTTCCAACTTCCATTAAAGACAACTTCGCTTCCATCTCCAGTCTCCACTGTGTTCTCTGACTGTTCCTATGGAAGCCCCCCATGACGACCTCATGGGCTCCCATAGCAGCAGCAGCACAGACGATTCAGGGCCCAGCCCCGGGCTCGGCCCTATAACGAAGAGAAAGCGGACTCAGCGCATCCGTGGGCCCAGCTCCTCCTGCACCGACTTATGCCTCTACAACCCTCCCGAAACGACGCCGCCGACCGAAGAAGAGGAGGACATGGCACAGTGCCTTATCATGCTGGCGCAGGGCCGGCCCAGGTCGCCCACCCCGGCCCAGCCCGAGAAGTTCACCAGCCGCAGGTTCACCGAGACCACCACCAGCGGAGGCGGGCGGGCCGGGTTCTACGTTTACGAATGCAAAACCTGCAACAAGTGCTTCAACTCCTTTCAGGCTCTCGGAGGCCATAGAGCAAGTCATAAGAAGCCCAAAAACAACTTGGGCGGCACTGATACGGGCTACGATCATCAGTTAGAGGCCGCTGTTATGGTCACCCCAATTAAAGTGGCCGCACCCAGTACTAGTAAGCTGAGAGTGCACGAGTGCTCCATCTGCGGAGCTGAGTTCTCCTCCGGGCAGGCGCTGGGTGGCCACATGCGACGGCACAGGCCTCTAAACGTCGTGACCACCTGTGAAAATCAAGAAAATAGGGAAATCAAGAGTGATAATAACGTGATGCTGGATCTTAACTTACCAGCACCTGCAGATGATCAGAACCATTCCAACTCATCGGTAGCGTTTCAGACTAGACCAATTGTGTTTTCATCTGCACTGGTGGACTGTCATTACTGATAAAACGAAATTGGCTCGTGAAGAAAATTGCTAGCCAGATGTAATTAACTTTTTTATTTTTTTTATTTGGTTGTTTGTGAAGTAAAAAAGTATACTAATTGATTAATTACCATTTGTTATATGATTGATGAAGGATAAAAGGTTTTAATAAACATAAATTCATTTGATTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008801217.1	9.1e-50	zinc finger protein ZAT5-like
Swissprot	Q681X4.1	5.4e-31	Zinc finger protein ZAT5
trEMBL	A0A8B7CKR9	1.9e-49	zinc finger protein ZAT5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28200.1	42.74	6e-38	154		C2H2-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06555	AT2G28200.1	234	90	10	54	255	65	286	42.74	6e-38	154
AfisC4G06555	AT5G04390.1	269	90	9	61	255	95	362	38.66	2e-37	152
AfisC4G06555	AT5G03510.1	296	132	12	14	255	2	292	35.47	6e-33	137

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	109	134	42.8	3.2e-11
PF13912.3	zf-C2H2_6	Domain	171	195	48.7	4.5e-13

Gene Ontology

Accession	Ontology	Name
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0009628	P	response to abiotic stimulus
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0071289	P	cellular response to nickel ion
GO:2000280	P	regulation of root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network