result

Gene information

Detail information of AfisC4G06626


Location
GeneChrStartEndStrand
AfisC4G06626chr412371554211237201959+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020247178.11.0e-304lysine-specific demethylase JMJ703 isoform X3
SwissprotQ53WJ1.15.1e-248Protein JUMONJI 703
trEMBLA0A8B7CM491.6e-283lysine-specific demethylase JMJ18

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G20400.146.260.0 733JMJ14;PKDM7BJUMONJI 14

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Ortholog group
SpeciesGenes
Allium cepag12027.t1
Allium fistulosumAfisC4G06626
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02375.14JmjNFamily14017356.32e-15
PF02373.19JmjCDomain369485148.96.4e-44
PF02928.13zf-C5HC2Domain59164242.74.9e-11
PF05964.11FYRNFamily77081636.92.2e-09
PF05965.11FYRCFamily82390766.31.8e-18

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0003714Ftranscription corepressor activity
GO:0005737Ccytoplasm
GO:0007338Psingle fertilization
GO:0007526Plarval somatic muscle development
GO:0008198Fferrous iron binding
GO:0009555Ppollen development
GO:0009793Pembryo development ending in seed dormancy
GO:0009910Pnegative regulation of flower development
GO:0010216Pmaintenance of DNA methylation
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019907Ccyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030717Pkaryosome formation
GO:0033601Ppositive regulation of mammary gland epithelial cell proliferation
GO:0034647Fhistone demethylase activity (H3-trimethyl-K4 specific)
GO:0034648Fhistone demethylase activity (H3-dimethyl-K4 specific)
GO:0034721Phistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0036098Pmale germ-line stem cell population maintenance
GO:0040010Ppositive regulation of growth rate
GO:0043970Phistone H3-K9 acetylation
GO:0043992Fhistone acetyltransferase activity (H3-K9 specific)
GO:0045475Plocomotor rhythm
GO:0045814Pnegative regulation of gene expression, epigenetic
GO:0046425Pregulation of JAK-STAT cascade
GO:0048579Pnegative regulation of long-day photoperiodism, flowering
GO:0060444Pbranching involved in mammary gland duct morphogenesis
GO:0060763Pmammary duct terminal end bud growth
GO:0061038Puterus morphogenesis
GO:0070193Psynaptonemal complex organization
GO:0070822CSin3-type complex
GO:2000737Pnegative regulation of stem cell differentiation
GO:2000864Pregulation of estradiol secretion

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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