result

Gene information

Detail information of AfisC4G06640

Location

Gene	Chr	Start	End	Strand
AfisC4G06640	chr4	1239613841	1239615546	-

Sequences

CDS

Protein

Gene

>AfisC4G06640
TAGAAATTAAACCTACAAAAAAATTGGAAGAGAATATTACTGTTTTGCAAAAAATGGTGAGAGCTCCATGTTGTGATAAGATGGGTCTGAACAAGGGCTCATGGACTGAAGAAGAAGATCAAATTCTAATTAACCACGTTCAGAGATATGGCCATAGTAATTGGAAAGCTCTTCCCAAGCAAGCAGGTAATCATTGTATCATTGAAACGTTTAGGTCATACACAAACACGTGTACATACATACACACACAGAGATACACACAAATACATACTTTATCCTGTCCTCTCTAAGTGTATATAAATATACTTATGGAAAAGAACATAATTGTTTAAAAAAGCAAAACTTAATTTTCATATAGTTCCTTGCAAAAAATTATTGAACATGAAACAGAAGCTTATACAGATAGAATACTAAATGTATGAATGTAAAATAAATCTAAAAAAAAAATTGAATATTTAGATCCTAGAGAATGATGCACTACCAATGAAAACATAAATAAACTAAAGGTATGTTTAGTCACACACGCTTCAAAAACCTCCCTTCTGGTGAAAAATATGTTTCACGAGAAATCATGTTAATGTTACCAACGAAAATTTGTCTTTTAAATTGCACATATTTTCGATTTTAACGGTAAATTTTTACAGTTCTAACCACATGTTTTGTAAAATAAAAATTTACAGCATACAACGCAAGAATGCGCAACGTACACTTAAATATTTCCAATCTACACTATAAATATATGTAGTTTAAAATGCACACTTTCGTTTGAGAATGTTGATAGGGTGTTTTTTTTGGAAATTTGTTTTTTAGAAGGGTTTTCCGGATGTTAAGTTTGAAAATAAGGGACGGATACTAATTTCAACTAAACTAAAATTAATGAGTATTGTTTGTTGAAATTGAAATCGAATCACTCACCACATATGTATAATAAAGACATTAAGAACAGTTGGCATTTTCATAAAAAATGGTGACCCCAAAGGTGCTATAACTCCTATTAAGCATGATTATTTTGACGTGTTTATTTGTATCTTAGGATTGTTGAGATGTGGAAAGAGTTGCAGGCTGAGATGGATGAACTACTTAAGACCAGATATTAAAAGAGGAAACTTTAGTGAAGAGGAAGAAGACATGATTATAAGCTTGCATGAACTGCTTGGGAACAGGTAATAATATTCAATCTTGTATACAAAATAAGTTATAACCTTTGTAAAATAGAATTTACTATATTATTAATGTTACATGCATTCAGATGGTCGCAAATAGCAGCGAAATTACCAGGCAGGACAGACAATGAGATCAAGAATGTATGGCACACACACTTAAAGAAAAGGCTTGTTGCTGGTTCAAATATTTCAAAAGAACTAAATCCAAATAGTTCCATAAATCAGTCAAATTTGAATGGGCTAATGTCAAACACCATGATAACTAATTCAGAGAATCTGAGTTTAGCTGATGTTAATATCAGCCGAGTATTATCAGACACTGCCAGTTCTTCATCGAGCAATATTATATCTGATAGTTCTAATCATTCTTCTATTTATCAAGAAAAGCTAGAGATGGATGTGAATTCGTGCACCGGTGCCTCATATGTAGAGAATTCAGTAACTGATAATTTGACCTGTACATCAACTGATGAAGATATGAACTTTTGGTATAGAGTTTTTATGAACGCAGGAGAAATGCAAGACTTTGCAGAATTATAAAAG

Functional annotation

Database	accession number	e-value	annotation
nr	OVA14897.1	5.0e-58	SANT/Myb domain
Swissprot	Q7XBH4.2	1.1e-57	Transcription factor RLTR1
trEMBL	A0A1D1YJT1	2.7e-58	Myb-related protein Myb4 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G31180.1	47.41	7e-59	223	ATMYB14;MYB14;MYB14AT	myb domain protein 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06640	AT2G31180.1	251	114	4	1	238	1	246	47.41	7e-59	223
AfisC4G06640	AT3G23250.1	284	105	5	1	235	1	281	44.72	1e-58	223
AfisC4G06640	AT1G06180.1	259	103	6	1	238	1	246	47.10	2e-55	212

Ortholog group

Species	Genes
Allium cepa	g193050.t1; g193052.t1
Allium fistulosum	AfisC4G06640
Allium sativum	Asa5G05616.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	60.5	1.2e-16
PF00249.28	Myb_DNA-binding	Domain	67	112	54.6	8.1e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network