result

Gene information

Detail information of AfisC4G06845

Location

Gene	Chr	Start	End	Strand
AfisC4G06845	chr4	1277849619	1277851102	-

Sequences

CDS

Protein

Gene

>AfisC4G06845
CAAATTCATAAGTTTAGAAAGCTAGAGGAAAAAAAAACAATTAAAAGCTAGATGAGCTTCCCAAACACTTATGATATCATTCATGAAGAACTAACAAAAGGCTATGATATCGCTATTCGGCTAAGTCATCTCTTGCAAGAAGCTTCTACTACCGAAGTGAATTCATCAACCGTAAATCTTGTGAGTGAAGTGACTAGTTCGTTTACGAGAGCGCTCATATCACTGAAACATGAAGGTTTGCAAAAGAAAATGGAAATGCCAAGAAAATTGTCTAGAAAAAGATGTTATCAAAGAAGGTATAAATACATAGCCTATACTACTATATACTGTTTCACTGTATGATTATATAACCAAGCATGGATTGATTGAACTAACATGAATAATATGATTATTATATAGTTCGCAGCCTTACTTGTGGAGGATGAACAAGGCGAAGACGCTTAATGATGGTCATTCATGGCGAAAATATGGGCAAAAGCCTATACAAGATGCAAAATTTCCTAGGTATCAATTCAAGTTTAAGAATTAATTTTACAAGTGTTGCTAATCGAGTCTAGAAATACAGTTCCTAAATTTTATATTCAGTTTGGCTTGCACAAAAGGATTTTCATGAGTTTTCTTGCTGTATATATATGAGTTTTTATGCTGTATTTTTAATATTCATTTTGTATCAGAAAAATGGGGCTCTAGTGTATGGTTAGTGTGATTTTGAAATAATGAAAAGAAACAAATATATATGAGTTTTGAAGGAAAAAAATATCAAAAAGTTAATAGAAACTGAAAAAAAAAGCGATAAGAAAATATATATTAATTTTTAGCAATATATTTGCTTGCTAATGCCATGTCTTAGTAAGAAATATAATTTATTCCATACAGGAGCTATTTCAGATGCAGACACAAAGCAGATCAGAACTGCAGTGCAACTAGACAAGTGCAGCAATCTGAAGAAGACCCTTCTGTGTTTCTCATAACCTACTTTGGAGAGCACACATGTACTAAAGACACATCTAAACTGTTATCAACTATCCTAAAACAAGAGGAGGACAACAGCAAACTAATTATAGATTTTAGTTCAGGAACATCAATGACTTCATCAAAATATGAGAGTGATGAAAATCGTGAATTTGTTGTTTCTTCGACGACGTCTAACGAGAACACAGACAATCTTTTTTCAAGTTTTGGAGAACTGGAAACGCAAGGGGCAGAAGATGTAACATCTATGGAGTCGTTTGGGTGGATAACAGATTGGGAGATGATGAATGATTCATTTCAGTATGATGTTGGTTTGTTTGGTTTTGAGCATATGCAAGATGAGTGGCTCATATAGATCAATATTGATTGGGAATCTTATTTGTAGCTTTTATATACAAAAATATATTTCCATTATTTGTTTTCTTTCCAGATTTACATAATCTATGTATGTTGGCATTCTATTTTAGTTAATGAAGTTTATTTTATTTTTGTGTATTTATGTAACATGTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020584387.1	1.9e-26	probable WRKY transcription factor 70
Swissprot	K4BIZ9.1	3.2e-18	WRKY DNA-binding transcription factor 70
trEMBL	A0A2I0WGT3	2.4e-26	Putative WRKY transcription factor 70

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46400.1	32.35	1e-21	100	ATWRKY46;WRKY46	WRKY DNA-binding protein 46

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06845	AT2G46400.1	170	100	3	9	166	7	173	32.35	1e-21	100
AfisC4G06845	AT2G40750.1	119	64	2	62	180	118	231	42.02	3e-21	99.0
AfisC4G06845	AT3G56400.1	95	46	2	62	156	87	179	49.47	2e-20	96.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	97	156	90.1	7.9e-26

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0007263	P	nitric oxide mediated signal transduction
GO:0009507	C	chloroplast
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009739	P	response to gibberellin
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009862	P	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010193	P	response to ozone
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0048527	P	lateral root development
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network