result

Gene information

Detail information of AfisC4G06852

Location

Gene	Chr	Start	End	Strand
AfisC4G06852	chr4	1280836095	1280837422	+

Sequences

CDS

Protein

Gene

>AfisC4G06852
ATGAATACCATTTTCTTCCCACAACTACCAAACCCGGACCCATTCATAGGAACCCACCACCGCCGTGCCCATTCCCACGATCCTTACAGGATCGCTGACATCAACCCTGGACCCGGTAACCTGTTAATGGACGATTTTGGGTCAAACGATGACCTCTTCCACATGTATTTAGACATGGAGAAGGTCGGTTCCGGGTGCCAAGAAGAAGGCGATCCGGTAAAGAAAACCAAGCATGGGCAAAGTCTCTCGGTTGGTGGGTTCGGGTACGGGTCCATAGAGGCTAAAAAGGCCATGGCTCCTGAAAAACTAGCCGAGCTTGCAGTCTTGGACCCTAAAAGAGCCAAACGGTAAAATATTTTATGTTTTTTATATAAACACTTACGTATGAATTCATGCACCATATATTGGTATTCAACTTTATTCATATGGATGCCTGCATGCAGAATTATAGCCAACAGACAGTCAGCTGCAAGGTCAAAAGAAAGAAAGGCACGTTACATTTCGGAACTGGAAAGAAAAGTTCAGACTCTTCAAATCGAACTCGCTACCCTTTCTGCACAACACTCTCTTCTTCAGGTTTTTTGTTTTATTTTTCTTCAAATTACTTGACTTTTGCTTCAGTTGTATTATGCTAAGAGAATCATATTATTCATTAGAGAGATATTACTAGTTTAGCTGCTGAAAACAATGAACTTAAGTTGCGGCTACAAGCTATGGAGCAACAAGCTCAACTGCATGAAGGTGATAATTTCTTCAAATATTCATATCTGATGCATAATTTATTAGAAATATTCATTATGTTAAGGATTTTGTGCAGCATTGAATGAGGCTCTGAAGAACGAAGTGGAGAGACTGAAATACGCGACAGGAGATGTACAAAATCCTTCTAGTACATGCAACATTTCACTGCAGCAAATACAACTAAATGAATCTTTTCATTCGCGTACACAAAATCAACATCATCATCATCAGCAACAACAGCTTAGTTTTCATCAGCCTGTTCAACAGTCACAGCAAATGTTTTCTAGTTGTCATATGGTCGATAGGAACCATAACCAGAATATGCGTGAAATTTCAAGTGTAATGATGATGCCGCAAGATCAGGTTGTGTTGGTTAATGGTCTAGATTTTAACAGTGAGCCTCAAATCGTGCAACCTGAAAGCTTGACCGCTTCTCCAACTGATGAAAGCAGCAATTGATTCTTTTGGTTGTTTGTGTTTTCCTGTCAATCTTTGTTTTTTGATTCATTTCGTGAATATGTGTATGTATATATATGTTTGTATCTTCTTTTAGTGCAGTAAGTGCAGTATGATCCTGCAAGAGGCAA

Functional annotation

Database	accession number	e-value	annotation
nr	KFK36932.1	3.7e-53	hypothetical protein AALP_AA4G191400
Swissprot	Q6S4P4.2	2.3e-55	Transcription factor RF2b
trEMBL	A0A087H480	2.7e-53	BZIP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40620.1	50.87	2e-61	232		Basic-leucine zipper (bZIP) transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06852	AT2G40620.1	289	102	8	10	270	24	300	50.87	2e-61	232
AfisC4G06852	AT1G06850.1	149	51	1	81	227	117	265	64.43	4e-46	182
AfisC4G06852	AT1G06070.1	280	96	8	11	236	66	334	42.50	9e-45	177

Ortholog group

Species	Genes
Allium cepa	g111467.t1
Allium fistulosum	AfisC4G06852
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00170.18	bZIP_1	Family	112	170	35.6	6.7e-09

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000828	F	inositol hexakisphosphate kinase activity
GO:0000829	F	inositol heptakisphosphate kinase activity
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0051019	F	mitogen-activated protein kinase binding
GO:0005654	C	nucleoplasm
GO:0007231	P	osmosensory signaling pathway
GO:0008272	P	sulfate transport
GO:0009294	P	DNA mediated transformation
GO:0009555	P	pollen development
GO:0009652	P	thigmotropism
GO:0009817	P	defense response to fungus, incompatible interaction
GO:0009861	P	jasmonic acid and ethylene-dependent systemic resistance
GO:0009970	P	cellular response to sulfate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032958	P	inositol phosphate biosynthetic process
GO:0043621	F	protein self-association
GO:0045596	P	negative regulation of cell differentiation
GO:0051170	P	nuclear import

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20557	VIP1; transcription factor VIP1	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network