result

Gene information

Detail information of AfisC4G07129

Location

Gene	Chr	Start	End	Strand
AfisC4G07129	chr4	1342672416	1342673383	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273178.1	6.2e-70	transcription factor MYB36-like
Swissprot	Q9FKL2.1	2.1e-62	Myb-related protein 36
trEMBL	A0A833VUK5	1.0e-66	Transcription factor RAX2-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57620.1	78.83	1e-63	239	AtMYB36;MYB36	myb domain protein 36

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G07129	AT5G57620.1	137	24	1	1	137	1	132	78.83	1e-63	239
AfisC4G07129	AT5G65790.1	130	21	1	1	130	1	127	81.54	5e-62	234
AfisC4G07129	AT3G49690.1	130	22	1	1	130	1	127	80.77	2e-61	232

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	62	59.6	2.2e-16
PF00249.28	Myb_DNA-binding	Domain	69	111	43.3	2.6e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008285	P	negative regulation of cell proliferation
GO:0009411	P	response to UV
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009785	P	blue light signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0035987	P	endodermal cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0045597	P	positive regulation of cell differentiation
GO:0048226	C	Casparian strip
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:1900384	P	regulation of flavonol biosynthetic process
GO:2000021	P	regulation of ion homeostasis
GO:2000067	P	regulation of root morphogenesis
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network