result

Gene information

Detail information of AfisC5G00135

Location

Gene	Chr	Start	End	Strand
AfisC5G00135	chr5	23929868	23933643	+

Sequences

CDS

>AfisC5G00135
ATGCAGCAGGGAGGGTCCCCATATGGGGCTCTTCCTTCACAGCCGCAAATGCAACAGTCGTCCGAGCTTCCTTCTTCCTTCCAAGGCATGGCCATGGCTGAAGCTGCTCCTCCAATCACCTCTCTTCCTCCTCCTCCTCCTCCTCCTTCTTCCTCGGTTCCCACCTTCGAAGAATTGGCCACTGGAGACGACCCTCTAGAAGGAGGAAGCGGAGGCAGTGGAGGAAACCGATGGCCTAGGCAGGAGACACTTGCCTTACTCAAAATTAGGTCCGACATGGACGCTGCCTTCAAGGACGCTACCCTCAAAGGCCCTCTATGGGAGGACGTTTCAAGAAAACTAGCTGAGCTTGGGTACAAAAGAAACGCCAAGAAGTGCAAAGAGAAGTTCGAAAACGTTCACAAGTACTACAAAAGAACAAAAGAAGGAAGAGCTGGCCGCCAGGACGGTAAAAGCTACCGCTTCTTCAGCCAGCTCGAAGCTCTTCACAGTTCAACTGTTTCTTCTTCTTCTCCGAGACAGATACCCATTAATCTGAATCCTTTACCCATGACCACCACCACAAATACTAGCACTGGTATTCCAAGACCTATTCAGGCTCAGAATCCGGCAACTTCGGCACCAATGCCAATCACATCCGTGCCTCCTCCTCCACCTGTTCAGCTGTCCAGTGTTCCATCACCAAATATGATTTCACATAACGTTCAGTACCCATCTACAGCAAAGCCAGGTGGGTTTTCTTCGAACAGCTCTTCTTCTTCATCTGGTTCTGAATCCGACGATGAGCAGACGGAGGATTTGCCGATGAGCGGGAAGAAGAGAAAGAGGGAGGGAGAAAGCGGAAGCAGGAAGATGATGGCCTTCTTCGAAGGGCTTATGAGGCAAGTTATGGAAAGGCAAGAGACCATGCAGAAGAAATTTCTTGAAGCAATCGAAAAAAGAGAGCAGGATAGGATGATCAGAGAAGAAGCCTGGAGAAGACAGGAGATCACCAGAATGGCCCGGGAGCACGAGCTTGCTGCCCAGGAGCGTGCAGCGGCTGCTTCCAGGGATGCTGCCATTATTTCTTTTTTACAGAAGGTTACCGGGCAGACCGTGCAGGTCTCTTCTCCAAACATTACGGTGAGTAATCAACTGCCTCCACCAAGTCAAACTCCGCCACCACAACCTCCACCGCCACCATCGCAAGTTCATCAGCAAACACCACCACCGCAGCCACCTCAGCAGACTCCGCCACCTCAGCAAGCACCACCGCCACCTCAGCAGCAGCAACAAAGAAATCAGGATATTGTGCTGCATCAATACCAAACAACACCGCCGGCAAATACAGAAATGACAACGATGCAGGTTATGGAGGAAGGATCGGGTGGAATGAGTGGGCCTTCTATGGATCCTACGTCATCGAGATGGCCCAAGGCGGAGGTTCATGCATTGATTCAGTTGAGAAGCGGGCTAGACTCGAGGTACCAGGAGACGGGCCCTAAAGGGCCCTTATGGGAGGAGATTTCGGCGGGGATGAGGAGGCTTGGGTACAATAGGAACGCCAAAAGATGCAAGGAAAAGTGGGAGAATATTAACAAGTACTTCAAGAAAGTTAAGGAGAGCAACAAGCAAAGGCCAGAAGATGCCAAGACCTGCCCTTACTTTCATCAGCTTGATGCTTTGTATAGAAGCAAACATAACAGCAGCAGCAGTGGTGGTGGTGGAAGTGGTTTGCTTCAGTTGACTCATCCAAATCCGAACCCAAACCCGAATCAGAATCCAAACCCGAACCCAAACCCAAGTCCTATTTCGATGATGGCGCCACCACAGTTAGCGGGGGATAAAGATCAGACAAACGGTGGAGCAAGAACGAACTTTTTCGGGCAGACTACAACTGGAGGAGGAGATGAAGGAGGCATCATGAAGAAGCCAGAGGACATTGTGAGGGAACTAATGGAGCAAACTAACAACAACAATGAGTATGGAAACGATCCAGACAGCGATAACATGGATGAGGACGATGAGGACGATGAAGATGGAGAAGACGATGAAGAAGAAGAAGGGAATGGGCAGTATAGAATTCAGTTTCAAAGGCAAAACAATGTAAGCAACAGCAACAACAATGGTGGTGGTAATGGAACTCCTACGCAGAACACAAGTGGGAACTCAACTGGTTCATTTCTAGCTATGGTCAGATAA

Protein

Gene

>AfisC5G00135
ATACAAAATAGTAAAATACACCACCGTTTAATTTTATTTCTGCTTTCCACCTCCCTAACCCTTTTTATATATATACACATATATTTCTTCTTCATCTTTACTATTTATTTTCCCTCATTAAATTAACAAAAAAATTCGAATGTACACAACTCATATAATAATCTTGATCCATGCTCTCTATTTAACTCCTTCACCATTTTAATATTCATTCTTTTGCCAGCCTTGAATCTCTTTTCCCTTACTCCTCTTCTGTTATCTTCCCCTCCCCCTTCCCTCCTTCCATTTTTTTTATACTTCGTCCGGCAATTCAATTGCCCGTTTTAAGTAAAGAATTAATCAAAGATGCAGCAGGGAGGGTCCCCATATGGGGCTCTTCCTTCACAGCCGCAAATGCAACAGTCGTCCGAGCTTCCTTCTTCCTTCCAAGGCATGGCCATGGCTGAAGCTGCTCCTCCAATCACCTCTCTTCCTCCTCCTCCTCCTCCTCCTTCTTCCTCGGTTCCCACCTTCGAAGAATTGGCCACTGGAGACGACCCTCTAGAAGGAGGAAGCGGAGGCAGTGGAGGAAACCGATGGCCTAGGCAGGAGACACTTGCCTTACTCAAAATTAGGTCCGACATGGACGCTGCCTTCAAGGACGCTACCCTCAAAGGCCCTCTATGGGAGGACGTTTCAAGGTATGTGTATATATACCAACTGTTTCTTCTATTTCAATTCAATTTTGGTTTTAAATTGTGAAATGTGGTACATGGTTAGAGATCTCTGTGAATTTAACGGTTTTTCTTGGGATCCAGATTTTGATATATAGTATTCATGATGTTGCTGTACTGTGAGTAGTGATAATGATAATGATGATGATGTTATAGCTTCTATTTTCTTGCTTTGGGAAAGAAGAATTTTTGCTTTATCTCTTTCAGATAGTGTTCTATGTCATATCAGTTTTTAAACCAAGTTAAATTGACTGTAATTTTCTTCTAATTTTGATGAGTTTTTTTTTTCTTACTAGAATTATGAGAGTCAGATCTTTCATTTTCACTCACCATCACGAGCACAGATTTTTAGTGAGAGCATCTTTTTAGTGTTTTGTTTAATTAATAGTAAAAAAAAATGTAATGAATAAGGCCATCTGGTACAATTTCTGGGTCATTTCTTTGTAAGCTCTGAAATCAATGACAAGAGTTCAGATCCATGGCATCAATCCCAACCATTTTCCTGCATTATTTTGTTAATTCTTGTACCCGTTTATAACTCCGAGATCCCACAATAATATATAATATAAATCAATGTATTTTTTTTTCTTTCTTTTTTATTAAAAAGCTATAGTCTAATCATGTAGACAGACAGATAGAAAGATGCCTGAATGTGCATGTAAGAATATAACTCATTCATCTTCCTTTTATGCCTTCTCCTCACCTTTTCCTGGATCTAAGCTTCGAAAAATTTCTTCTTCTTTTTTTTCTCACAGAAAACTAGCTGAGCTTGGGTACAAAAGAAACGCCAAGAAGTGCAAAGAGAAGTTCGAAAACGTTCACAAGTACTACAAAAGAACAAAAGAAGGAAGAGCTGGCCGCCAGGACGGTAAAAGCTACCGCTTCTTCAGCCAGCTCGAAGCTCTTCACAGTTCAACTGTTTCTTCTTCTTCTCCGAGACAGATACCCATTAATCTGAATCCTTTACCCATGACCACCACCACAAATACTAGCACTGGTATTCCAAGACCTATTCAGGCTCAGAATCCGGCAACTTCGGCACCAATGCCAATCACATCCGTGCCTCCTCCTCCACCTGTTCAGCTGTCCAGTGTTCCATCACCAAATATGATTTCACATAACGTTCAGTACCCATCTACAGCAAAGCCAGGTGGGTTTTCTTCGAACAGCTCTTCTTCTTCATCTGGTTCTGAATCCGACGATGAGCAGACGGAGGATTTGCCGATGAGCGGGAAGAAGAGAAAGAGGGAGGGAGAAAGCGGAAGCAGGAAGATGATGGCCTTCTTCGAAGGGCTTATGAGGCAAGTTATGGAAAGGCAAGAGACCATGCAGAAGAAATTTCTTGAAGCAATCGAAAAAAGAGAGCAGGATAGGATGATCAGAGAAGAAGCCTGGAGAAGACAGGAGATCACCAGAATGGCCCGGGAGCACGAGCTTGCTGCCCAGGAGCGTGCAGCGGCTGCTTCCAGGGATGCTGCCATTATTTCTTTTTTACAGAAGGTTACCGGGCAGACCGTGCAGGTCTCTTCTCCAAACATTACGGTGAGTAATCAACTGCCTCCACCAAGTCAAACTCCGCCACCACAACCTCCACCGCCACCATCGCAAGTTCATCAGCAAACACCACCACCGCAGCCACCTCAGCAGACTCCGCCACCTCAGCAAGCACCACCGCCACCTCAGCAGCAGCAACAAAGAAATCAGGATATTGTGCTGCATCAATACCAAACAACACCGCCGGCAAATACAGAAATGACAACGATGCAGGTTATGGAGGAAGGATCGGGTGGAATGAGTGGGCCTTCTATGGATCCTACGTCATCGAGATGGCCCAAGGCGGAGGTTCATGCATTGATTCAGTTGAGAAGCGGGCTAGACTCGAGGTACCAGGAGACGGGCCCTAAAGGGCCCTTATGGGAGGAGATTTCGGCGGGGATGAGGAGGCTTGGGTACAATAGGAACGCCAAAAGATGCAAGGAAAAGTGGGAGAATATTAACAAGTACTTCAAGAAAGTTAAGGAGAGCAACAAGCAAAGGCCAGAAGATGCCAAGACCTGCCCTTACTTTCATCAGCTTGATGCTTTGTATAGAAGCAAACATAACAGCAGCAGCAGTGGTGGTGGTGGAAGTGGTTTGCTTCAGTTGACTCATCCAAATCCGAACCCAAACCCGAATCAGAATCCAAACCCGAACCCAAACCCAAGTCCTATTTCGATGATGGCGCCACCACAGTTAGCGGGGGATAAAGATCAGACAAACGGTGGAGCAAGAACGAACTTTTTCGGGCAGACTACAACTGGAGGAGGAGATGAAGGAGGCATCATGAAGAAGGTAACTAACTGTTTGTGAAAATTAAGTCATATTACTAAATGTTTTTGAAGTATTAAAAGAATATGTTCTATCCTTTTGTTTGTAAAGCCAGAGGACATTGTGAGGGAACTAATGGAGCAAACTAACAACAACAATGAGTATGGAAACGATCCAGACAGCGATAACATGGATGAGGACGATGAGGACGATGAAGATGGAGAAGACGATGAAGAAGAAGAAGGGAATGGGCAGTATAGAATTCAGTTTCAAAGGCAAAACAATGTAAGCAACAGCAACAACAATGGTGGTGGTAATGGAACTCCTACGCAGAACACAAGTGGGAACTCAACTGGTTCATTTCTAGCTATGGTCAGATAAATCTAAGTGGAGGCTTTTACTTCTTCAGTTACTGTTATATGTGTCTTCAGTATTATCACTAGCATAGTGTCCAGTGGTTAAAAATTATAAGAAAAAAAAACTTGCAATTTCATTGATTTGTTGTGGAATAATAAGGATAGGCTCCATCCAAATCACATTATAGAGAAAAGAAGCCTGGAATCCCCACTTAGTTAAAATTATACAAACAGATATATTTGTCATTTATATGAGATTGGTACCATCAGTTCTCTAAAATTGGGTAAAAATACAAATATATGGGGGGAAATAAGAAGACCGTGGGGGCAGCAGAGAGAAATAGAAGTGGTTTGGTTTGGAGATTTTCTTTTGTTGTGTAATTTTTTTTTTTTTCAATTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010250883.1	2.2e-104	PREDICTED: trihelix transcription factor GTL1 isoform X1
Swissprot	Q9C882.2	6.0e-75	Trihelix DNA-binding protein GTL1
trEMBL	A0A1U7ZRQ1	1.6e-104	trihelix transcription factor GTL1 isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76890.2	44.12	4e-109	392	AT-GT2;GT2	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00135	AT1G76890.2	519	206	9	68	562	32	490	44.12	4e-109	392
AfisC5G00135	AT1G76890.2	115	60	3	74	187	394	502	41.74	1e-20	99.0
AfisC5G00135	AT5G03680.1	554	265	18	77	611	119	575	31.23	9e-59	225

Ortholog group

Species	Genes
Allium cepa	g360884.t1
Allium fistulosum	AfisC5G00135
Allium sativum	Asa6G06883.1
Arabidopsis thaliana	AT1G76880.1
Oryza sativa	LOC_Os02g43300.1; LOC_Os03g02240.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	76	162	73.3	1.4e-20
PF13837.3	Myb_DNA-bind_4	Domain	468	555	81.9	3e-23

Gene Ontology

Accession	Ontology	Name
GO:0005488	F	binding
GO:0006351	P	transcription, DNA-templated
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048827	P	phyllome development
GO:0050789	P	regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network