result

Gene information

Detail information of AfisC5G00234

Location

Gene	Chr	Start	End	Strand
AfisC5G00234	chr5	40613349	40617669	+

Sequences

CDS

>AfisC5G00234
ATGGCTTCTCTTCTCCCCCCTCCATCAACAAACATTCGAAAATTACAATATTACGCACACTTCTCATCTCCAAGGAAAACCCTAGCATTAAAATGCAACGCAACAAACGGTGAAAACTTGGATAATTTCATTATAAACACACTGAACCTGAGTGAAGCAAACCCTACATTCCCAATAATCAAATCCAGACTCGATGAGTACAGCAAACTAGTATCGGAAACACCAGGCTTCGAAAAATGGGGAGTAGCGATAATCATCGGGCTTGGTTGGGTCTACTTAACTGCAAGGCCTGGCGTACTATTGGGTGCAATCGATGCGTATTTGTTGGCTCCATTGCAATTAGGATTTGATGTGTTGCTTGGAAGAAGAAACCTCAAAATGGCGGATTTTATTGTCGGTGAAAAATTGGGTGAAGGATCGTTTGGTGTTGTTTATGCAGGGGCGATTGTGGGTAAAAATGTTAGTGTGGAGGAGAGAGTTGGGAAAATGGGAAAGAAGTTGGGTAAGGATGATCGGTACAAGCAAAGAGTCATTTTGAAAAAGGTTAAGATTGGAACAGTTGGAGCAGAAGAATGTGGAGAGTATGAAGAGTGGTTTAATTACAGAATTTCTAGAGCAGCTCCTGAAACAAGTGCCGAGTTTCTTGGCAGTTTCGTTGCTGACAGAACATTCTCTCAATTCACCAAAGGCGGCAAATGGCTTGTCTGGAAGTTTGAGGGTGACAGAGACTTAGCTGATTACATGAAAGACAGAAGCTTTCCTGTAAACTTGGAATCCATAATGTTTGGTCGTGTCCTACAAGGGCTGGACTCGATGAAGCGCAATGCCCTTATCATAAAGCAAATAATGCGACAGATAATAACCTCTCTTAAGAAAATTCATGACAATGGCATAGTGCATAGGGACATTAAGCCTTCGAACTTGGTGGTAACGAGGAAGGGAAAGATCAAGCTTATAGATTTTGGTGCTGCCACTGATCTTCGTATAGGAAAAAATTATGTTCCAAATAAAGGGTTGCTTGACCCTGATTATTGCCCTCCTGAATTATATGTTATGCCTGAGGAAACACCAGAACCTCCAGCAGAGCCTATCGCTGCCATCCTTTCTCCAATTTTATGGCAGCTTAACAGCCCAGATTTGTACGACACATACTCAGCCGGGATCATACTAATGCAAATGGCGGTTCCATCAATGAGATCAACAGCAGGACTCAGGAACTTCAACGCAGAGATAAAAAGAGTGGGTTACGACCTGAATAAATGGAGGAATTCAACCAGATCAAGGCCAGACCTGAGCATACTAGATTTAGATTCAGGAAGAGGGTGGGATTTGGCGACAAAGCTTGTGTCTGAGAGAGGCTCTTTCAGAAGAGGAAGGCTATCTGCTTCCGCTGCGTTAAGGCATCCTTATTTCCTTTTAGGTGGAGATCAGGCTGCAGCTGTGCTCTCTAAGTTCAGTTTGAGCAGATGA

Protein

Gene

>AfisC5G00234
CTCAGCCCCGCGATAAAACCATAGCCTGCCACGTGGCCAAAGTGCAACCCCTCTGTGCTCTGTTTTTCCCCCACATAAAAAAGAAAACATAATCTATTCATATTAATTCATGGCTTCTCTTCTCCCCCCTCCATCAACAAACATTCGAAAATTACAATATTACGCACACTTCTCATCTCCAAGGAAAACCCTAGCATTAAAATGCAACGCAACAAACGGTGAAAACTTGGATAATTTCATTATAAACACACTGAACCTGAGTGAAGCAAACCCTACATTCCCAATAATCAAATCCAGACTCGATGAGTACAGCAAACTAGTATCGGAAACACCAGGCTTCGAAAAATGGGGAGTAGCGATAATCATCGGGCTTGGTTGGGTCTACTTAACTGCAAGGCCTGGCGTACTATTGGGTGCAATCGATGCGTATTTGTTGGCTCCATTGCAATTAGGATTTGATGTGTTGCTTGGAAGAAGAAACCTCAAAATGGCGGATTTTATTGTCGGTGAAAAATTGGGTGAAGGATCGTTTGGTGTTGTTTATGCAGGGGCGATTGTGGGTAAAAATGTTAGTGTGGAGGAGAGAGTTGGGAAAATGGGAAAGAAGTTGGGTAAGGATGATCGGTACAAGCAAAGAGTCATTTTGAAAAAGGTATTCTTTTTTTTTACCCATAGTCAGTGGTGGAGCCAGATTTCAAGGCTGAGGTGGTCACTTTGTATAATTTATAATAATAAATTTTTTTGAAATTTTTGTTTTTTCATTCCATTTTCATAAAGATCCTGTAATATTGATAAAAGTTGTTCAAAATTGAAAATAAAATAACGAGAGATGATTATTAAAAACTTCTATTGTATAACCATTGAAATATAATTCAGCTTACAACTAAATCACCGGTTTCAAAATAAACAAGTTGTTTCAAAAATTAATGCAAAACAGCTTTAAATAATATTTTAGTTTCAGGGTAAGAAGCAGTTGACACAACACATTTCACATCACAGCCATCCTTTCAGCTTTTTTCTTAATCCATCTTTTCTTCTTCAAAAATAGTTAAATTTGATAAAAAAAAATTAATCTTATATTTCTTGTATTCTCTGCAAATCTTGGGGTGGGCACTTGCCCTCCTCAGCACCCATGTAGCTCCGCCCCTGCCCACAGTTGATACTTATTTACGGCAAATTACCGTGCTTGGACTATAACCATTAAAGCATCTTCAAACCCACTTGTGCATGCAATGTAAAATGGTGTACACATCATCAAACGACAATTTTTTTTAAAATTTTGTCTCCAATGTCAATGTTAATTTGAATATGGAGCTTAGTTGGCAAAAATTGAAATAGACTGTAATGTGCCACATCGCCTAATATGGTACGGACGATGACTATATAACCAATTAGGAACTCTCTCCTTACAAGCTAGTTTTGGGTGGTGAGTTCTACCTTATTTGTTTCATAACAAATGGTATCAGAGCCTAACACCACGATTGAAAAAGTTCGAAACTCGTTAGTGACATGTATATGTATGGACGACATGTATGGACGTGACGTCACTCTGTCGAACCGCTCCATTGTATGGGCGGTGTCAGTGCAATAGAACGACTTGAATTCCCATGTTGTTTGCATTGAAAATGCTTAGGGAGACCAACCACTTGCTCTTAAATTTAAAACTACTAAAATGCACTTATGTCTTGGAACATTAGATTGTTACAATACTAACAGTTGCATGTAAAAGTTCACCTCAGTTTAAATAATGGAAAGATGAATATCCATAATGTGCTTTATGTAAAGTCACATGGCATGAAAAAGATATTTGTAACACTACAGGTTAAGATTGGAACAGTTGGAGCAGAAGAATGTGGAGAGTATGAAGAGTGGTTTAATTACAGAATTTCTAGAGCAGCTCCTGAAACAAGTGCCGAGTTTCTTGGCAGTTTCGTTGCTGACAGAACATTCTCTCAATTCACCAAAGGCGGCAAATGGCTTGTCTGGAAGTTTGAGGTATGTTATTTCATACTAATATATTTGATACAAAGTACATATTGATACATTAAATTATATGTTTTCAGGGTGACAGAGACTTAGCTGATTACATGAAAGACAGAAGCTTTCCTGTAAACTTGGAATCCATAATGTTTGGTCGTGTCCTACAAGGGCTGGACTCGATGAAGCGCAATGCCCTTATCATAAAGCAAATAATGCGACAGATAATAACCTCTCTTAAGAAAATTCATGACAATGGCATAGTGCATAGGGACATTAAGCCTTCGAACTTGGTGGTAACGAGGAAGGGAAAGATCAAGCTTATAGATTTTGGTGCTGCCACTGATCTTCGTATAGGAAAAAATTATGTTCCAAATAAAGGGTTGCTTGACCCTGATTATTGCCCTCCTGAATTATATGTTATGCCTGAGGAAACACCAGAACCTCCAGCAGAGCCTATCGCTGCCATCCTTTCTCCAATTTTATGGCAGGTTTGTATATCTATTCCTAACATACATCTAGACACTACATATGTGTATATGTGCTATGACTAATTCAAATTTTGCATAACCATCTGATCACCATTTGGGCTGTTTGATATTAATTCTGATTTTGTCAATATTAAAAGCTTGTGTTTTAAGTAGCTTATTTTGTAGTGGGTTAAAGTAGGCAAAACAAAGATTTGTCTGGATAATGTTATCATGATGGATATATTCTAGATTTATCTTATCTAGAGTTATCTAAAGAGATGTTTAGAGGTGTTTTTTAGGAGCCTGCAAAATTTTCACTCAATTTATGACAAAAGACTAACAAGGGAAATAATAAACTTGTAAATTTTGGATGGAAAGCTTAAAGACTCACTGGTTTGAAGAGTGTACGTGATTTTCAATTTACGTTCGTTGATTCATAAGTTTGATTTTGATTTTGGTTAATGAATTCAACTAAAATCAACTTAATTTAAGATTCTATAATAAAGCCCTAGAAGTAAACATCAAGAAAGGGTTTTGAACGAAGCTTAGATGATTTGATTTGAATGTATATTATTCCTTGCTCGCCAAGTTTGGCGATGTAAAGGAATTGATTTTTTGCTTTCTGTTTTTTAGCAAAATAACACGGTGGGTGCATGTGGGTTTAGGAAGATATATATAATAATTTAAGTGGGTGATGGGAGTGTGGATTTAGTGAGATGAAAAGTGGTTGTGTGTGTGTAGTGAGTATGTAATAACTCTAGAAACTCTTTAGAATTCTCATGTGCAATATAAGATATTTATATAGAAGAAATATGGAGAGGTGTGTTCCATTTTATAAGCAAGCAAAGACGCAAAAAAATTGTAAGAAAAGTTTGTGGGGGTGTGTGTGTATGACTCGAAAAAAGTCATCAAACTTAACTCTTCATACTGTAATATTATTTTTATTTTGAGGCCTATCCAATTTTAACTACTGGCTCGGCAATTGCCTTCATTACCATGTTTCTAGTTTTGCTTTTAAATAAAAAGAAAGAAAATGATTTTATGGCAGGTGTGTGAAAGTCCCAATATTAAACCTAAAGAAATGCATATGTATCCTTAATAAGCATACGTCTGCGTACTTTTCAACTTGTACATGTACAACTAACATATTATCTGTTTACATAAAAGAAAAAGTTTAACATGGCAAATGCATTAATGTTGTTCACAGCTTAACAGCCCAGATTTGTACGACACATACTCAGCCGGGATCATACTAATGCAAATGGCGGTTCCATCAATGAGATCAACAGCAGGACTCAGGAACTTCAACGCAGAGATAAAAAGAGTGGGTTACGACCTGAATAAATGGAGGAATTCAACCAGATCAAGGCCAGACCTGAGCATACTAGATTTAGATTCAGGAAGAGGGTGGGATTTGGCGACAAAGCTTGTGTCTGAGAGAGGCTCTTTCAGAAGAGGAAGGCTATCTGCTTCCGCTGCGTTAAGGCATCCTTATTTCCTTTTAGGTGGAGATCAGGCTGCAGCTGTGCTCTCTAAGTTCAGTTTGAGCAGATGACTGTTACTGCTGCATTTCTTTGGTATGTTTATAGTACAGGGTTCAGGGGTTTTTATTTGAAAAGTATATGTTCTAGTTTTCAACATGCAACGCATCCATATTGTTTAGGGGCGATTAGTCTTATGGACAAATTTGTACCGAACAGAGCACGAGCTCTCAAATGGTACTGTACGGTAATGCAATAATATGAGACGATATATTCATATTTTTCAGTTCACATAATATGAGATCCCATTATTATGTAGAATGTTATATTCATATTTTTAGTTTTCGTAATGTTATTATAAATAACACTAAAATATGAAATGCTACAGTAGCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243870.1	6.3e-209	serine/threonine-protein kinase STN8, chloroplastic
Swissprot	Q9LZV4.1	1.4e-184	Protein STATE TRANSITION 8
trEMBL	A0A6I9R8U7	8.1e-206	serine/threonine-protein kinase STN8, chloroplastic

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G01920.1	66.47	0.0	639	STN8	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00234	AT5G01920.1	510	135	8	1	489	1	495	66.47	0.0	639
AfisC5G00234	AT1G68830.1	405	195	10	92	488	101	469	40.99	4e-74	275
AfisC5G00234	AT1G12680.1	243	117	10	245	478	166	362	29.22	3e-10	63.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	275	349	67.6	9.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000278	P	mitotic cell cycle
GO:0005739	C	mitochondrion
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006468	P	protein phosphorylation
GO:0007623	P	circadian rhythm
GO:0009534	C	chloroplast thylakoid
GO:0009643	P	photosynthetic acclimation
GO:0016043	P	cellular component organization
GO:0032501	P	multicellular organismal process
GO:0032870	P	cellular response to hormone stimulus
GO:0042549	P	photosystem II stabilization
GO:0042651	C	thylakoid membrane
GO:0044767	P	single-organism developmental process
GO:0045719	P	negative regulation of glycogen biosynthetic process
GO:0060917	P	regulation of (1->6)-beta-D-glucan biosynthetic process
GO:2000766	P	negative regulation of cytoplasmic translation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network