result

Gene information

Detail information of AfisC5G00248

Location

Gene	Chr	Start	End	Strand
AfisC5G00248	chr5	42947931	42950063	+

Sequences

CDS

Protein

Gene

>AfisC5G00248
ATGTCGGTTCCCAAGGGTAGTGTAAGGGAGAAGAGGACCCCCAAAGCGAATCTGTATTATAGAAATTCAGAGTTTGTTCTTGGGAAGGAAAAGTTGGCACCTTCAGATTCGAATAAGTCAAAAATGGTCGATAGTAAGGTTTATTGTTATGCATTTAAGAGCTGCAGTTTATTGTTAGCGAAATTAATGAAGCATAAGCATTGTTGGGTGTTTAATACTCCTGTAGATGTTAAAATTCTTGGGTTACATGATTATCATACCATCATTAAGCACCATATGGATTTAGGTACTGTTATGAATAAGTTAAGTCAAAACTGGTATAAAACCCCCGAAGAATTCGCTGAAGATGTAAGATTGACATTTAGGAATGCAGTGACTTATAACCCAAAAGGGCAAGATGTGCATGCAATGGCTGAATAGCTTTTGCAGTTGTTTGAGGAGAAATGGCCTGCTATAGAGGCAAAATATATGCACGTTTCTCTAAAGATAGAGTCGAATAAGAAACCTCCACCTCTTGATGCAAGGAATTTTTTTAGAAAGATCTGATTCAACAGCTAATTATCCATTATCTATCGATTCTAAAACAAAACCAGTTTCTTTTGCATCGACGCCACATGCGGGACGACTGCCTGTGCTTAAGAAACCTACAGCAAAAGATTTGCATAAGGGAGAGATGACTTTTGATGAGAAGTAAAAGCTGAGTGAGAACTTACAAAATCTACCTCCTGAAAAGTTGGATAACATCGTGCAAATAACCAAGAAGAGAAACTCAACGTTGAGTCCGAACGACGATGAAATTGAAGTGGATATAGATAGCGTTGATATTGAAACTCTTTGGGAGCTTGATAGATTTGTTATCAATTATAAGAAGAGTTTGAGCAAGAATAAGAGGAAGGCGGAGACAGTTCTTCATCCTTCTTTATCGCATCCAGTGGAGTTCATCGATCTTATAATCGTGTAAAAGGCAAGAAAGGTACGAGAAAGGGAGTTCCTTGGACCCAACTGGAGCACAGGTATTTTTCCTTTTTCTGTACTACTTACTCTTTAAAACAAAAGAAAAAAAAGAAGAAGAAGAAGAAGAAAAAGGAAGGTTATGACATAATTCTGTGATGTATGGAAAACAACATAGGTTATATAACTTATTCATAAGACAGGTAGTAGTAGTATGTTTCATGTTTAACTGGTTAATGACTACTTTCATATTCATTAACAATGCTACTATGTTAAAGATCCGGGGTTGACATAGGATTTTTGTGATGTATTTACTATACAGACCATTCTTAATGGGTCTAGAAAAGCACGGAAAAGGGGACTGGAAAAACATATCGAAATTTTTTTTGATAACAAGAACACCAGTTCAAGTGGCTAGTCATGCACAGAAGTATTTCAATATGCTTAACTCGGAAAGCAAAGACAAAAAACGAGCGAGCATTCACGACATTACAATTGGTAACCTATCAGAAGTATTTATACAACAAGGCAGTGCTGGTGTGTATTCATCTGGAATGGAATTTGAGTATCAAAATCATTATACAGGAGGAGGTATTCATTTAATGAAGCTTACTTAGATACTTAAATTATGCAGTGTGCATGTTTGATTTAGTTAAGTATAGGAACTCATGTTTGTGTACACTTGAGATTTTTTACTGAGAAATAACTCTACAAAAACAAGTTATCTATAAGAGAGAACATATTTATATATTCTTGTGATATAAACTGATGTGTTTTGCTGTGCTTCCAAGGATGGAAACCTATGAGACTACTACACAAGAAGTTACCCAAGAAAAGGTATATTTTAACACTTGATGTCATTTTTGATCGTGTCAGTTTTGGATATGGATATGAAAGTTAATTTTGAATTTTATATTTGTTTGTTGGGCAGACATCTAATATCATTGCTGAGGAAGTTCCTAAGGAAAGCATGACCGGTAATACTTTGTTACTTATTTCCAGTTATACTTGCTTCTGATACTAATTAATTTTGATTATATTTTGGAATTAGTCGTTGATGAGAAAGAAGTGGCTTCTTCTTCACCAAAAGGTGATGAACAAATGAATAATGCAAGTAGGTCTAGTAGTTCAAGCAGCTCCAGCAGTGGCTCTGGCTCTTCTTCTAGCGGTATATACGTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_018676374.1	1.2e-46	PREDICTED: transcription factor GTE4 isoform X4
Swissprot	Q9LNC4.1	2.1e-32	Protein GLOBAL TRANSCRIPTION FACTOR GROUP E4
trEMBL	A0A836XZH7	7.8e-48	Transcription factor GTE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06230.1	57.50	5e-31	132	GTE4	global transcription factor group E4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00248	AT1G06230.3	120	39	2	9	117	369	487	57.50	5e-31	132
AfisC5G00248	AT1G06230.3	60	18	0	117	176	627	686	70.00	2e-12	70.1
AfisC5G00248	AT1G06230.2	120	39	2	9	117	369	487	57.50	5e-31	132

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00439.22	Bromodomain	Domain	55	129	37.9	1.2e-09
PF17035.2	BET	Family	101	158	46.6	2.7e-12
PF00249.28	Myb_DNA-binding	Domain	193	228	27.9	1.8e-06

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000793	C	condensed chromosome
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0002574	P	thrombocyte differentiation
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006334	P	nucleosome assembly
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009723	P	response to ethylene
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030307	P	positive regulation of cell growth
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:0051704	P	multi-organism process
GO:0070577	F	lysine-acetylated histone binding
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:2000469	P	negative regulation of peroxidase activity
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network