result

Gene information

Detail information of AfisC5G00332

Location

Gene	Chr	Start	End	Strand
AfisC5G00332	chr5	60825099	60828955	+

Sequences

CDS

>AfisC5G00332
ATGGACAACAATAACATCAATCATAATCTTATTGATGAAAGCAATGATCCTTTTGCAAATACCCTCCTCGAATTAGCAGCAAACAATGATCTTGACGAGTTTAAACAGTCAATAGATCAAAATCCCTCAACTATCAACACCATTGGATTATGGTATGGAAGAAAAAAAGGCTGTAGCCAAATAGTATTGCATCATAGAACACCCTTAATGGTAGCTGCTACATACGGTAGTCTTGATGTACTGAAAACTATACTATCAACATCAGAAATCGATGTAAATATGACTTGTGGTGATGATAAAACCACTGCTTTGCACTGTGCTGCATCCAGTGGATCCGTTAATGTAATCGACGTGGTTAAGCTTTTATTAGCTTCTGGTGCAGACTCCAATATCAAGGATGTAAATGGTTTTCGCCCAGCTGATTTGATTGTTGTCTCTCCTAAAGTGGTCCATGTAAAAATAGATTTAGAAGAGCTTTTAGGCAAAACTCATGCTAATGGGAGTGTTAACACGAGATCCTTGCCTATGATTTCAACATCAGTTTCTGCTCCAGAGAAGAAAGAGTACCCTATAGACCCTTCCTTACCCGATATCAAGAACAGCATATACATGTCAGATGAGTTTCGTATGTATTCCTTTAAGGTACGTCCTTGCTCTAGGGCATACTCCCACGATTGGACAGAGTGCCCTTTTGTTCACCCAGGCGAAAATGCACGTAGAAGAGATCCAAGAAAGTACCACTACAGCTGCGTTCCATGTCCCGACTTTCGAAAAGGGGCATGTAGAAGAGGAGATCTGTGCGAGTACGCGCATGGGGTGTTTGAGTCCTGGCTTCACCCTGCTCAGTATCGCACCAGACTGTGTAAAGATGGCACCGACTGTGATCGTAGGGTATGCTTTTTTGCCCATACTAACGAAGAGCTTCGCCCTCTTTATGTGTCTACTGGATCTGCTGTTCCTTCTCCTTACATGCCAGGGTCACCATTGTCTTTCTCTCCTCCCATGTCTCCGGTAGCCGCTGTACATTTGTCTGGAAACAACTTTCTGTCAAGTAGGCTAAGGTCATCTTTAAGTGCACGTGACATGCACGTAGATGACTATTCCATGATCCAAGAGTTTGAATCTCGATCGAGTACACCAAGGTCTATGAATCCGATTCCATCGAATTTGGATGAGTTATTCTATTCTGAACACTCGTCATCTCCAAGATATTCACTTTCTCCAATCAATACTAATATGCATGGGCGTAATGCACTCTTGCAAGCTTCTCTTGGCATTTCATCACCTGGAAGAATGTCTCCTAGGAATATGGAGCCTATTTCTCCTATGAACTCTAGATTGGCTGCAATTGCTCTAAGAGAGAAAAAAATAAATAGTTTACACAGCTTGAGTTCACGTGATTTGGGTTCGAACTTGAACGCTTCTATGAGCTCACCATGGTCAAAATTTGGTTCAGGTTCTAGCACATTGGATTGGGGAGTCAGTGGTGAAGAGCCTGGTCAACTTAAGAGGTCTTCTTCATTTGAAATGAATCTAAATGGTGAAGAGCCTGATCTCTCTTGGGTTCAATCATTGGTCAAAGAACCATCTTCTGAAAAAGTTGCCAGTAATGAACTTGGCGATGGTGATAATGGTCTGGATGTTGCTTTAGGTGCTTGTTTGGAGAAGATGAAGTTGAATCATATGGTAGCTTAG

Protein

Gene

>AfisC5G00332
TAAAGAGCTCAGACTTGGTTCGAAGGGTTTAACTTTTGACCACACATAAATTCTTGGAATAATCGTAAAATCGATGGATTTTCTTCGGGTCAGATTTGCGATCTCTTCTACTGGATCGCCGCGTCTTTAACATTCATCGAAAAATCTCAGCTTTCTGAGCTCCACCGCATGGAGATCTTTTGTGATTTAATCGTCCACTGAATAGGTAAGATTTTTATTCCAGAATAAGTTTTAGTTCTATAGAAATATTTATAAATGGCAGGTTTACTCAATATTCTGTTCTGGCCTTATCTTTCAGTGATTGCAGATTTGCTAAAGTAATGCAATAATTATCCAAATAATCAAAGTTTAAATATAATTCTTAATCTGTCATGAGTTTTATTCAGTGTGTTAATTGTGTATATAGGTCTCCATATTTTATCCAATATTTTTACATTATTTTCTAGGTTATTTTTTTTTGTTCCATTCAAAGTGCGTGTGGCGACCTTGATCATATTCAACCTTCTTCATCATCACAAGCCATGGACAACAATAACATCAATCATAATCTTATTGATGAAAGCAATGATCCTTTTGCAAATACCCTCCTCGAATTAGCAGCAAACAATGATCTTGACGAGTTTAAACAGTCAATAGATCAAAATCCCTCAACTATCAACACCATTGGATTATGGTATGGAAGAAAAAAAGGCTGTAGCCAAATAGTATTGCATCATAGAACACCCTTAATGGTAGCTGCTACATACGGTAGTCTTGATGTACTGAAAACTATACTATCAACATCAGAAATCGATGTAAATATGACTTGTGGTGATGATAAAACCACTGCTTTGCACTGTGCTGCATCCAGTGGATCCGTTAATGTAATCGACGTGGTTAAGCTTTTATTAGCTTCTGGTGCAGACTCCAATATCAAGGATGTAAATGGTTTTCGCCCAGCTGATTTGATTGTTGTCTCTCCTAAAGTGGTCCATGTAAAAATAGATTTAGAAGAGCTTTTAGGCAAAACTCATGCTAATGGGAGTGTTAACACGAGATCCTTGCCTATGATTTCAACATCAGTTTCTGCTCCAGAGAAGAAAGAGTACCCTATAGACCCTTCCTTACCCGATATCAAGAACAGCATATACATGTCAGATGAGTTTCGTATGTATTCCTTTAAGGTACGTCCTTGCTCTAGGGCATACTCCCACGATTGGACAGAGTGCCCTTTTGTTCACCCAGGCGAAAATGCACGTAGAAGAGATCCAAGAAAGTACCACTACAGCTGCGTTCCATGTCCCGACTTTCGAAAAGGGGCATGTAGAAGAGGAGATCTGTGCGAGTACGCGCATGGGGTGTTTGAGTCCTGGCTTCACCCTGCTCAGTATCGCACCAGACTGTGTAAAGATGGCACCGACTGTGATCGTAGGGTATGCTTTTTTGCCCATACTAACGAAGAGCTTCGCCCTCTTTATGTGTCTACTGGATCTGCTGTTCCTTCTCCTTACATGCCAGGGTCACCATTGTCTTTCTCTCCTCCCATGTCTCCGGTAGCCGCTGTACATTTGTCTGGAAACAACTTTCTGTCAAGTAGGCTAAGGTCATCTTTAAGTGCACGTGACATGCACGTAGATGACTATTCCATGATCCAAGAGTTTGAATCTCGATCGAGTACACCAAGGTCTATGAATCCGATTCCATCGAATTTGGATGAGTTATTCTATTCTGAACACTCGTCATCTCCAAGATATTCACTTTCTCCAATCAATACTAATATGCATGGGCGTAATGCACTCTTGCAAGCTTCTCTTGGCATTTCATCACCTGGAAGAATGTCTCCTAGGAATATGGAGCCTATTTCTCCTATGAACTCTAGATTGGCTGCAATTGCTCTAAGAGAGAAAAAAATAAATAGTTTACACAGCTTGAGTTCACGTGATTTGGGTTCGAACTTGAACGCTTCTATGAGCTCACCATGGTCAAAATTTGGTTCAGGTTCTAGCACATTGGATTGGGGAGTCAGTGGTGAAGAGCCTGGTCAACTTAAGAGGTCTTCTTCATTTGAAATGAATCTAAATGGTGAAGAGCCTGATCTCTCTTGGGTTCAATCATTGGTCAAAGAACCATCTTCTGAAAAAGTTGCCAGTAATGAACTTGGCGATGGTGATAATGGTCTGGATGTTGCTTTAGGTGCTTGTTTGGAGAAGATGAAGTTGAATCATATGGTAGCTTAGAAGAGCTGGGTGCAAATGAAGGTTAGTAAATAAGAGTTCTATTTTTGGTTTGTCGAGGCGGCGATCAAAGAGATAAACTTGATAGTATAATTTATCATTTACCATTACCGTTACTATTACTTCAAAAATTTGGGTAAAATGGAGGGAGTTGCCTGGGTTATTTCAAAACTTATCTAGGTACATGCTCCCCTGGTATACTTAATTTTTTGAATCCCTTTTTTGGGTTGAAATATTTTTAAAAGAGGATTATATGTGTATTTACTTTGAAATTTATCCAGATACTTTAAATATTCCCTTTGTTACATTGATTTTTTTACTAATTATTGTTTAAGTCTGCTTTACTAGTACTATTATAAAATTTATATCTTATCATTTCAATTAGGTCTCTGTGTTGTAAAACAGAATATTATTTTGTTATTTGCCAAATCTTTGGTCTTTTACATTCTGTATGGTGTTTATAAACTTTATGCTTGCTCATGTTATTTAAATATCAAGCATTTTTGCTAGTTTATGTTTCTTTTCTGAATGAAAATCTTAAAGAATAAATCATACGACGAATAAGATTTTACTGCTGCACAATAGGAATGCAGTTTCTGACAATAGGAATGTTTCAAAGTAGAGTAAGTGAACTTGAATGTTAAGCTTCATAGTTTCTTTTGATTTGAAAACAGTGAAGTCTACTATTTATCTATATGGCCAAATTATTCTTTCTTGATCATGGAAAAAAAAAAAACCAAGAGAATAAAAACATAGTTTGTGCCATGTCGATGACAAATAGTCTATTACCTGGGAGACCAAATCTAGTGCACATATCTTTCTTCTATGTAAGAATATGAGAATGATCATCCTTCTAGTAAACTTGTCTTATCTAAAGATAAATCTTATTTGTATGATAAGTTCATCCAATATCGATATGCTTTTAGGCACAATATACACCACATATAGAACATAAGCTAGACCATTATGTTGTGTTGGATATATGTAATTCTTGACACGTTGTACATTATTTGCTTCCTTTATAAAATTTAAAGCAAAAATATTATTTTGACAGAAACATCAAAATTTTCTTGAAAAGTGTGGGTGTCATTATCATGGTGGTGGGTCTGTAGGTGGAATTATGAATCAGAATCCATACTTTCATGTTGCGGATAGACCTATTAAGATTGTGACTTGTTTTTTTTTTTCTTTCCGAATTTAAGAATATCTATAAGGGAATAAGCAGATGGCAATATTCCTGCAAATAAGATTGAGAATATTTTACATATTCTTCAAACTATTTGGGGAATAATATGATACAATCAACATCAGCATATGTATGTTAGAAGTTACGTTGATCAGGACAATTCTTTTTTTGGCTTTAGTTTAGAATCCACACGCTATATCTTTCGTCATGTTTGTAGCAATTTTTAGGTGCTTACCTTTTTTTTTCATCTTCTTTTTGCCTTTTATTTTTCAAGATTACCAACGCCGAAGTTTACGCCCTGTGTCGTAACGTTGCATATGATATTTGAACATGAAATGTTAGATATGCCTCAAGTAATATATATATATATATATAAAAGTAGTATAGTTTAGTTATCTGAGGGTTACATGTTTTTATTTTTTAATTGTATTGTTCAAGTCGTCTAGTGGAATGTTTCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257981.1	5.6e-193	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24-like
Swissprot	Q10EL1.1	3.4e-171	Zinc finger CCCH domain-containing protein 24
trEMBL	D5M8I6	2.6e-184	C3H1-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41900.1	49.28	2e-166	582	OXS2;TZF7	CCCH-type zinc finger protein with ARM repeat domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00332	AT2G41900.1	698	207	20	1	564	29	713	49.28	2e-166	582
AfisC5G00332	AT5G12850.1	642	195	18	20	533	40	661	46.57	1e-144	510
AfisC5G00332	AT5G58620.1	605	252	15	11	535	3	591	42.48	9e-117	417

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12796.4	Ank_2	Repeat	60	133	43.5	3.3e-11
PF00642.21	zf-CCCH	Family	252	272	25.3	9.3e-06

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0036464	C	cytoplasmic ribonucleoprotein granule
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network