result

Gene information

Detail information of AfisC5G00464

Location

Gene	Chr	Start	End	Strand
AfisC5G00464	chr5	87709548	87712257	+

Sequences

CDS

>AfisC5G00464
ATGGCATACATGTGCGCGGATAGCGGCAATCTCATGGCCATTGCTCAGCAGCTCATCCAGCAAAAGCAGCAACAGCAGCAACAACAGCAGCAGCAACAGCAACGAATCCAGGCTCTCCAAAACGCACCTTCCCAACCGCACCCACTTTCCCACCCTGCCTTCACCGCCGGTCCCCACTCCTCCTTCCTCGACTTCCATGACGACGACGTCAGCTGCTGGATGGACTCCTCCTTTTCCGACCTCCTTCCCGTCGACTCCTGGCACTTCCCCGCTGAACCCTCCGATCTCAACTCGGTCGTCTTCTCCGACTCCGTCAACCTCGCCGCCGCCGTCCCCACCTCCGTCCCTGACCACTCGCTTCTCTTACCCGACTCCTTCAACAGCAACGACAACAGCAACCAATCTAATTCCGTGATAAAACGTCTCCTCGACTGTGCAAACATCATCGACTCCGATCCCTTTCAGGCCGAGAAATCACTCTCCAAAATCAAGGAACTATCCTCCGATCTGGGAGATCCAACGGAGCGAGTAGCGTTCTATTTCCACGAAGCACTGACTCAACGTTTGAACAGAAGCTGCTCATTCTCCTCCACTGATTACTTGCCTCCTGAGGATTTCACTTTATGTTACAAGGTGTTAAACGACGCATGCCCGTATTCAAAATTCACTCACTTAACTGCAAATCAAGCAATTCTTGAAGCTACAGAAACATCAAGTAGGATCCATATCATTGATTTTGGGATTGTTCAAGGGGTTCAGTGGGCCGCCTTACTGCAGGCATTGGCGACCCGACCTACAGGAAAGCCCGATAAAGTCCGAATATCAGGCATCCCTGCTGCTGCTTTTGGTGAATCACCTGAAAAGTCATTAGCTGCAACATCAGCTAGGCTTAAAAATTTCGCACAGCTACTTGATCTTGATTTCGAGTTTGATTCTATATTAACACCTGTTAGTGATATAACGGAATCCACATTCCGGGTAGAAGAGAACGAGTCTCTTACAGTTAATTTCATGCTTCAACTCTACACTTACTTGGAAGATCCTCCGCTTCTTGTTGAGAGAATTCTAAGAATTGCAAAATCTTTGAAGCCTAGTGTTGTGACCTTAGGTGAATATGAAGTGAACTTGAACAAGGTAGGGTTTTTAGCAAGGTTTAAGAATGCATTGGAGTATTACTTAACTGTTTTCGAGTCTATTGAACCGGGTTTGGATCGAGAGTCGATGGACCGAGTTCGGGTTGAAAGGTTGTTGCTTGGTAATAGGATTTTGAAGGTGGTGGGGCCCGAGAATGATAAGAAGAGGAGGGAGAGAATGGAGGAAAGGGAGAATTGGAAGGTGATGATGGAAGGGTGTGGATTTGAGACATTGCCATTGAGTAATTATGCTATAAGTCAAGCTAAGCTTCTGCTTTGGATATATAATTACAGCTCGAGATTTACGGTTGTGGATTCTTTAACGGGGTTCCTGTCTTTGTCGTGGGAGGAGAGGCCATTGTTAACAGTTTCATCGTGGCATTGA

Protein

Gene

>AfisC5G00464
CATTCATAATACTTTGTTTGACCATCCTTTGGCTTGCAACCCGACTTTACAATGTTTAATGTGTGATTTATTTTGTTTCAATGTATTTTGCAGTTTCCGATTTATGTGTTTGACAAACCCATTTTTTATACTGTTCAGAGGTAAAATTTGGTTCCCTTAGCTAGCCCAAAAAGCATATTACTGCACTGATTGCGTCTACGACCTCTGCTGTCAAGTACTATTTCTCATTTAAAATGCCCAATTTTGTTTGCTCCTTCTCTCTTCTCTGACACACTCCCTCTCACTCCCCTCCTGCAACCAAACCCTACTTGTCCCATTTCTCTCCTCCATTTCCAAGTTTTCGAAACCAATTTGGGGGAAACTAACAGTCCACACCAGCAAAATCACTCTTCTTTTTAAATCAACAATGGCATACATGTGCGCGGATAGCGGCAATCTCATGGCCATTGCTCAGCAGCTCATCCAGCAAAAGCAGCAACAGCAGCAACAACAGCAGCAGCAACAGCAACGAATCCAGGCTCTCCAAAACGCACCTTCCCAACCGCACCCACTTTCCCACCCTGCCTTCACCGCCGGTCCCCACTCCTCCTTCCTCGACTTCCATGACGACGACGTCAGCTGCTGGATGGACTCCTCCTTTTCCGACCTCCTTCCCGTCGACTCCTGGCACTTCCCCGCTGAACCCTCCGATCTCAACTCGGTCGTCTTCTCCGACTCCGTCAACCTCGCCGCCGCCGTCCCCACCTCCGTCCCTGACCACTCGCTTCTCTTACCCGACTCCTTCAACAGCAACGACAACAGCAACCAATCTAATTCCGTGATAAAACGTCTCCTCGACTGTGCAAACATCATCGACTCCGATCCCTTTCAGGCCGAGAAATCACTCTCCAAAATCAAGGAACTATCCTCCGATCTGGGAGATCCAACGGAGCGAGTAGCGTTCTATTTCCACGAAGCACTGACTCAACGTTTGAACAGAAGCTGCTCATTCTCCTCCACTGATTACTTGCCTCCTGAGGATTTCACTTTATGTTACAAGGTGTTAAACGACGCATGCCCGTATTCAAAATTCACTCACTTAACTGCAAATCAAGCAATTCTTGAAGCTACAGAAACATCAAGTAGGATCCATATCATTGATTTTGGGATTGTTCAAGGGGTTCAGTGGGCCGCCTTACTGCAGGCATTGGCGACCCGACCTACAGGAAAGCCCGATAAAGTCCGAATATCAGGCATCCCTGCTGCTGCTTTTGGTGAATCACCTGAAAAGTCATTAGCTGCAACATCAGCTAGGCTTAAAAATTTCGCACAGCTACTTGATCTTGATTTCGAGTTTGATTCTATATTAACACCTGTTAGTGATATAACGGAATCCACATTCCGGGTAGAAGAGAACGAGTCTCTTACAGTTAATTTCATGCTTCAACTCTACACTTACTTGGAAGATCCTCCGCTTCTTGTTGAGAGAATTCTAAGAATTGCAAAATCTTTGAAGCCTAGTGTTGTGACCTTAGGTGAATATGAAGTGAACTTGAACAAGGTAGGGTTTTTAGCAAGGTTTAAGAATGCATTGGAGTATTACTTAACTGTTTTCGAGTCTATTGAACCGGGTTTGGATCGAGAGTCGATGGACCGAGTTCGGGTTGAAAGGTTGTTGCTTGGTAATAGGATTTTGAAGGTGGTGGGGCCCGAGAATGATAAGAAGAGGAGGGAGAGAATGGAGGAAAGGGAGAATTGGAAGGTGATGATGGAAGGGTGTGGATTTGAGACATTGCCATTGAGTAATTATGCTATAAGTCAAGCTAAGCTTCTGCTTTGGATATATAATTACAGCTCGAGATTTACGGTTGTGGATTCTTTAACGGGGTTCCTGTCTTTGTCGTGGGAGGAGAGGCCATTGTTAACAGTTTCATCGTGGCATTGACAATATGGTAATTTTTAGGAGTTTTAGGGGTGAAATGGTTTTCTTTAGGTAGATCTGTTTTGGTTTATTATGATGCAGCGGCATGGTTATGGAAAGCTCTAAATTAGGTAACATTTGCAAGCTGTCTGGTTAATGTAGTTTTGGTCTTTTGTATTTTTATGTTGTGGAAATACGTTATGTCTTCAACCCCTTTCCCAGAAATTGTGTACCTTTAGTTTTTATTAATATTATGATGATATTAAGAATACCTTCTGCAATTAAATGTTTAAAATTGCATATGGAACTAGTGTGATCAATATAGTTGATTAGTCTGCTTTTACCATTTCTGATACGAGTCACTAAGCTTGCTGATGTTCTTGTTGTGTGTGTATAGACACACACATGTGTGTATATTTGTGCATAAAATTGTTTAAAAATTAGCAATATTCACAATTTACTTAATCGATGATCAGTGACATAGAATATGAACAATGCTACATGTCTTGATTTCACTTGTGCCCACCGGTTAATTATTTCACAATTGTTGGGGGTTCACTTTGTCATTTATTTCATATATATAAATTGGTGCATATGTACGTACTTATGTAAAATTGGGAGTAATAGCGTTTTGCAGAAACTATACTCAACATTAATGTCATGTTTGTACCTCTTTCACTTTTAACATTGAGATGTGCTAATTCCATAGAATATGCATTATAATTTTCAAGCTACTATGCCACTGTATAAATTGTGATACTTGACTTGAAATTTGACGCCACTTTGATTGAATACGAGGAGGCACAAGAG

Functional annotation

Database	accession number	e-value	annotation
nr	RWW82402.1	1.2e-133	hypothetical protein BHE74_00009121
Swissprot	Q9FL03.1	3.3e-125	GRAS family protein 32
trEMBL	A0A4V4H721	1.1e-133	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G66770.1	60.87	1e-130	463		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00464	AT5G66770.1	368	144	0	138	505	217	584	60.87	1e-130	463
AfisC5G00464	AT3G50650.1	372	157	3	138	505	177	542	55.11	2e-111	399
AfisC5G00464	AT3G03450.1	389	221	12	130	504	172	544	35.48	1e-55	214

Ortholog group

Species	Genes
Allium cepa	g81636.t1; g81639.t1
Allium fistulosum	AfisC5G00464
Allium sativum	Asa6G06728.1
Arabidopsis thaliana	AT3G50650.1; AT5G66770.1
Oryza sativa	LOC_Os03g51330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	139	504	354.2	6.7e-106

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009739	P	response to gibberellin
GO:0009755	P	hormone-mediated signaling pathway
GO:0043565	F	sequence-specific DNA binding
GO:0048731	P	system development
GO:0071229	P	cellular response to acid chemical
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network