Detail information of AfisC5G00564
| Gene | Chr | Start | End | Strand |
|---|
| AfisC5G00564 | chr5 | 109678854 | 109701727 | - |
| Database | accession number | e-value | annotation |
|---|
| nr | ONK59928.1 | 6.5e-39 | uncharacterized protein A4U43_C08F12390 |
| Swissprot | Q05024.1 | 7.3e-11 | Protein TRI1 |
| trEMBL | A0A199US68 | 4.6e-34 | Upstream activation factor subunit spp27 |
| TAIR id | % identity | e-value | bit
score | gene aliases | Short description |
|---|
| AT4G34290.1 | 56.91 | 2e-32 | 134 | | SWIB/MDM2 domain superfamily protein |
>>>Show top 3 blast result 
| Query id | Subject id | alignment
length | mis
matches | gap openings | query
start | query
end | subject
start | subject
end | % identity | e-value | bit
score |
|---|
| AfisC5G00564 | AT4G34290.1 | 123 | 45 | 2 | 19 | 133 | 21 | 143 | 56.91 | 2e-32 | 134 |
| AfisC5G00564 | AT2G14880.1 | 100 | 41 | 0 | 34 | 133 | 41 | 140 | 59.00 | 1e-30 | 127 |
| AfisC5G00564 | AT3G03590.1 | 91 | 38 | 1 | 47 | 135 | 51 | 141 | 56.04 | 1e-23 | 105 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|
| PF02201.15 | SWIB | Domain | 62 | 133 | 96.7 | 4.8e-28 |
| Accession | Ontology | Name |
|---|
| GO:0000500 | C | RNA polymerase I upstream activating factor complex
|
| GO:0001165 | F | RNA polymerase I upstream control element sequence-specific DNA binding
|
| GO:0001168 | F | transcription factor activity, RNA polymerase I upstream control element sequence-specific binding
|
| GO:0005737 | C | cytoplasm
|
| GO:0006325 | P | chromatin organization
|
| GO:0006355 | P | regulation of transcription, DNA-templated
|
| GO:0042790 | P | transcription of nuclear large rRNA transcript from RNA polymerase I promoter
|
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|
| - | - | - | - | - |