result

Gene information

Detail information of AfisC5G00594

Location

Gene	Chr	Start	End	Strand
AfisC5G00594	chr5	114253768	114255490	+

Sequences

CDS

Protein

Gene

>AfisC5G00594
ATGTCCAAATTTCAAGATTGGAGCTTGCCTGTCTGTCTTTTTTCTTTTTCCTTTTTTGGAAATTGGGCACTTGAGTGGTAGTACAAAGTTGTACTGCTAGTACAACCATACAACGGTGGAAGACTGACAATTAAGTAGTATAATCCAAAGAAAAAATATTTGTTGCAGTTTTTATGCTAATTAAACAGATGATAATAATGATAATATGTTGAATAAAATTACTTATGTTATTAGAAACAAAAAATAAACGTATAAATAAAATGTACATTAGAGAACAATTAGCAATTAAGAATACATATATATAACTTTGTTCCAAAAAATATTTCCATCGTCTAAAAACAAATTAAAATAAAAAGTAAAGGTCAAATGCTTACCGATCATCTAAGTAAAGTCCAGTTCCATATTTCGAATAGTTTTGTCAATAATTTTTTCTTACAGTGAAGTAATCTGAAAATATATATTTATAATTTTTCTGAAAATAAATAGAAAGTTTGAAGTATAACTAAAAAAACAGAATTCTTTTTATCAATTTTCTAATTCTTAATGATATATGAATTTCGATTAACTAACTCGAGTTTTATTGAAAATTTTAGACACTTACGATTTATTCAAGGTTTCTAAATTTTCTCCAAAAAGTTTCAAACTTCTTCGAAAAGATGCATTCTTGAATAAATTTGATTTTTTTTAGGACATTTTAAAAGTTTTGAACTTGCTAAGAAGAAATATATGAAAAACTTTTGTTTTATCTTAAACAATATTTGAATCTGCACAGCAGACTTAAATTTGCATTTGAATGATTTACTTATTCATAACAGAGCTACTATATAAGCATCAAGATGAGATTCATTTGGCAGTAATATATAGAAGTTACTATTAGCCATGCTTTCTTTCATTGATCTTTAGATTCAATATCTTTTTCTTGTTAAACTCCAAGTCTACAAATAATCTAACAACTTGTAATACATATACAGCTTGGCAATTACAATTCTTTTGAAGGAGTTCTATACTGCAGACCACACTATGATCAGTTATTCAAAAGGACTGGCAGTCTAGATAAGAGTTTTGAAGGTGGTTATCCACACATACATAAAAATACACACACATGTATATGTGTATTTATATTTATATGTAATTTCCCACTCATCTTCTTTTTATGCAAGAACTTACAGATTCGTTTAACATTATTCAGGTACTCCAAAAATTGCCAAGCCAGAAAAACATATAGTAAATGAGGTAACATACCATGTATCGATGTTATTTTCATATATGATTAGTACATGTTATAGCATGTAAATAATGGATTCTATGTAAATTATCTTTAGGGTGCGGCAAGCAAAGTATCAGGAACATTTGCAGGAACTAAAGAAAAGTGCTTTGGATGCAGCAAGACAGTGTACCCTACTGAAAGGGTACTTTTATTTCACATACATTATATATTATATATATATATGTATGTATATGTGTGTGTGTGTGTATTCAAATAACTTACCAAGATAATGTAGCTAATTTATGGCGATTTATATAGGTGATGGTAAATGGAATAACATATCACAAATCATGCTTCAAATGCTGCCATGGAGGATGTACCATTAGTCCATCAAACTACATTGCACATGAAGGGAAGTTTTACTGCAAACATCATCACACTCAACTTGTTAAAGCCAAAGGAAATTATAGCCAGCTCGAAAATGATTCTGAGAAACTAGCTAATGAAGCAGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020168283.1	8.0e-37	LIM domain-containing protein WLIM1
Swissprot	Q94JX5.1	9.5e-35	Widely-expressed LIM protein 1
trEMBL	V9HVX4	5.8e-37	Transcription factor LIM

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G10200.1	68.00	2e-34	140	AtWLIM1;WLIM1	GATA type zinc finger transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00594	AT1G10200.1	100	29	1	6	102	86	185	68.00	2e-34	140
AfisC5G00594	AT1G10200.1	72	42	0	20	91	3	74	41.67	4e-11	63.2
AfisC5G00594	AT3G55770.5	84	30	0	9	92	90	173	64.29	3e-26	113

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00412.19	LIM	Domain	27	81	43.8	1.9e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003729	F	mRNA binding
GO:0051015	F	actin filament binding
GO:0051017	P	actin filament bundle assembly
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008270	F	zinc ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network