result

Gene information

Detail information of AfisC5G00641

Location

Gene	Chr	Start	End	Strand
AfisC5G00641	chr5	121610311	121611703	+

Sequences

CDS

Protein

Gene

>AfisC5G00641
ATGGATAATATATTCAATGATGCACTACAAAATCCATTAACTCTAGACAAACATGACATCAAGCATGATAACATGACACCATTTTCTTTTGATTTTCCTTTTAGGCTTAACAAAAATAGTGAACAAATGCAAAGGATACAAATTGCTTCTTTGAATTCTAGCTCTTTTAATGGTTCTTTTAAGGTCAGCACACTAAATGATTACATCCAAAATGAAAATTTGGAAAATTTTATGGACAATAATCGCTATAAAAAGACCCTTTCAGCTATTTTGAAGAATTCAAAAAGGTTAAACTCTTCCTCGGTCTTTCCAATTGGTTCTCGTGCATCAAGTTTTACAACATGGAGAAGGAATTTGAGTATGCATAATATGGTAGGTGGGGTGTCTCAGAAAATGTTAAAGAAGATTTGTTCTTCTTGGTTTACAGAAGAATGTGGCTGTAGAAATAAAGCTTCAAAACAAGAAAAGGACAATGTGGGAACAAGCCATGTATTGTCAGAAAGGCAAAGAAGAGAAAATTTGAATGAAAATTTTCTTATTCTTCGGTCGCTTCTTCCTTCCATGTGGAAGGTAATCAAAATTTATACAATAAAAATAAGAATTCTATCTCTATCTCCAGAATACACGTCAATCTATTATTAAAAATATGATTGTTGAGCTTGTAGATATAAACCAACAAATTAACATCTTATCTGTCAATACTTTATATTTAGGAATACTATATATTATGTTAACATGAGTCCTCAGCTTAAATTTATCATCTTCCTTGTAAAAGATTGCAATTTTTTGATAATGCAACTTTCATCATGTTTATGAACTTAAGATACAATGATCCTACTTGGGGAGAAAAAAGAGGTTATGTTTACATAAAATATATTTGGACCGGGTTAGAAAACCTTGTGCATTTTTTGTATACATTTTTTAAGAAATACAAGGACTTCACAATTGATGTTTCTTTGAAAGCTCATAGTATACTAATATTATTTGATTTTAGGTGGACAAAGCATCGATCCTCGGTTATGCAATAGAATATCTAAAAGAGCTTGAAAAAAGAGTAACTAAGCTTGAATCTTGCAAAAATACAGCAGAAGTACAAGCAAGAGAAAATCAAAATAAAACTGAAAGAACGTCTGATAATTTTAGAAACAACTTAAATAAAAAGGCGAACAAGCGAAAAGCTCATGATATGGTTGAATCGGAAGCTGCATGCATAGATGTTAATGTGATTGAAAAAGAAGTAATGGTAGAGTTGAAATGCACTTGGAGAGATTCTTTACAACTAGAGATTTTCAATGTGCTAGATGAACTTGAGTTGGAAACTCAGTCAGTGCTATCTTCCAACGTGAATGGAATACTTGCACTTACATTAAAAGCAAAGGTTTGTCTTTCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	QFU95050.1	1.8e-143	bHLH transcription factor
Swissprot	Q9CAD0.1	4.9e-29	bHLH transcription factor bHLH002
trEMBL	A0A5P9Q3E6	1.3e-143	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G63650.1	36.40	6e-36	148	AtEGL3;ATMYC-2;EGL1;EGL3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00641	AT1G63650.3	272	153	6	61	318	308	573	36.40	6e-36	148
AfisC5G00641	AT1G63650.2	272	153	6	61	318	308	573	36.40	6e-36	148
AfisC5G00641	AT1G63650.1	272	153	6	61	318	308	573	36.40	6e-36	148

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	161	208	40.9	1.3e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001708	P	cell fate specification
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0007154	P	cell communication
GO:0009813	P	flavonoid biosynthetic process
GO:0010026	P	trichome differentiation
GO:0010200	P	response to chitin
GO:0010440	P	stomatal lineage progression
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0050826	P	response to freezing
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0044700	P	single organism signaling

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network