result

Gene information

Detail information of AfisC5G00860

Location

Gene	Chr	Start	End	Strand
AfisC5G00860	chr5	163264822	163267535	-

Sequences

CDS

Protein

Gene

>AfisC5G00860
TAAATCTTCTATGCGTAACTGTACAACGAAAAACAGCCAACCCAGCAATCATGCGCAATAAACATTAACAAATCAGACAGACAAATTCGAAACCACCCATCTGTATGACACGGGTATCCTTCTACTTCATTTCACCAACTTTACAACAAACCAAAACTTACCTCCTTTTTGTTTGTGGACGTCCATTTAGCACCAGATAATCAAGACAGAATCATACAAAGAGGGAAAGTGGTAACCATTCACCCACGTAGTAGCATCACTCATCATTCAAGCATCTTTCTGCCAACTCCTATTGGTTTATTATTCCAGCTGCACTCCTCGGCTCGTTCAAACCATAACACAACTCTATTTGAGTGAGTGAACGAATCGGCCCGACAAAGCAAGTTTGATATTTACACAGTATTGTTTGTTGTCTTGATTCGGTTTTGTAAATGAATTAGATGGACACAAATAGACCCACAAATTACAGCTCCAGCTCTCTCACCCTTACAGATGTTTGCTTCCAAGAGAACCACACCCCACCCTACCCACACACACAGTGTACCTATCTTCTTTCGCTACTACTCTATAATAGCATTCCTTTGAACTTCATAACAGTTATGTCATCTTATAATATTTGGAACGGTTGCCACATGATCATTGATCTAAATGTGCCTTCAGACTTTCCTGACTGGACTGGCGATAATAGCATTATGGGATCAAGCACAGCTGATACTAGAAGGCCAAAAGAAGATCAAATTCTACATGATAATAATGACAGATGTCGGTTGAGGTATGAAGATGAAGGTGTTGGCAGTTCTTGTTACGATTTTATTGGGAGGTTATGTGGAACCAACTCGCCGGATATGATGATCAGACACCACTCATCGCCCGTGGATGTTCAGACCACCATGGTTGCAACAAGTGATAACATTGTGAGTTAGGTGCAATATAATGCGTTGGGCAGTGTTTATAGATTTTAATTACATTTAAAAGTTTTGACAAAAAAATCGTTGGATTTTAAAAATGCATGAATTGTAGCATTACAAACATCATGCTTGCTCTATTTCTGTTTGGTATTTTAGCCAAAAAAAAAAAGTTCACTCATAAATAGTGAGCTAAAACCCTGTTGCAGGCCCCTATTCAAGCAGTGTCAAACATTGGAAACTCTAAGCCGCTATTTAACTAGAGTGAAACATTGAAAACTTATACAGCAGCCACTCAGCTTGTATTTTTCCCATTTTTGTTTCGCATTTCTTCGCATCTTTATCATGTATGTTCTGACTTCAAATGAATATTCACGTTATAGAAAATTTTACTTTTAATTTAAAATTTTATATAGCATCTTTTTATCAATTTAACCCACTTGTCTCAAAACATATAACTGATATATGCTTATTTTATAATGTTGGCACTGATTCGGCCATATGTATTGGCTCAGTTTGAGATTATGCCAATGCATTTTCTTGTTTTTGAAGAATTAGTATTGACATACGTTGAGAGTGCACAACTATACGGAAAAAAATTGGCAAAAAATACATGGACTCGTTTCAAAGTGAGAGCATACAAATTGTTGACACCAACATAGAAAAGATAAACTTAAGTATGCAGTAAGTTTTAAAAATAGGTTTAAATTTGTTATATATTTTGAACAAAGGGTTTTAATGATTTTATTTTTTTAAACAAAAAACCGTTTATGTTAGAAAAAAGATATACATGAACTTTTTACTCGGAATCAAAGATTAAGATTAAATCTTGATTTTGACTTCATGAATTCCTCGTATATATCTCTCCTTGTAATAATTTGATCATGCCATTGTTTTGATCCAACAGTTATACTAATTTGAGTACAATTTTCAATATAAAAAAAGTTGACTGTATAGGTCCTTCCCCTTTATATGAAAATTTATTTATAAAAAAGTTCAACGTTAACGTTTTAAAAACTAATTTCCATCAAAAATGTACGGAATTTAATTTTATTTTCAAGTAATACAAGTGATATGCTTGTTTAAATTATATGATGAAGCTTACATTATATTATGCAAAAAAGGCCATCAATTCTGCTGAATGATTTTTAGGCGTCTAAACTATAAGCATTTATAATAAGTATTTGTGAGATGTATTATTTATACATTTCATCCTATTTCGAGGCGTATTATTGTGAACTCTTAACACTTACATCACCCGTTATGATATCCGAAGATCCTACTAAACATGTGGTCTTCAACAAATATACAAGTATAAACTTCTATTTCAAAAAAAAATTTACATGCAGACGTCAAATTCAGTATCCAATGATGCATCAATCAGCAGTTGTGCAAAAGATCAAATAAATGAAGGCGCGAAATTAAACCAAAGCAATCCAAACCCAGATAGAGAAACAAAGTTGCTGAGGTACAGGGAAAAAAGGCAAAAGAGAAGATATGAAAAGCAAATTCGATATGTTTCTAGAAAAGCTTACGCGGAAGTGAGGCCTCGAATCAAAGGAAGGTTTGCAAAGACACCGGATATATGTCGAGCTCTAATCTATGATAAAAACAAAAATGTCTCAAATTACAATCGGAAAAGAAATGATTTTGAATGGTACCACCACCATCAATCTTGATTGATTAAGTAGGAAAAGAACAGTGCAAAGCTATAGATTTATGTGACGTATATGATCTAAGTAGATGCATTATTCTGAACACGGAACTTGTTCTGATTGAAGGAATTGTTACTTGTTTGTGTACTTGTGT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK73575.1	1.8e-19	uncharacterized protein A4U43_C04F33070
Swissprot	E5RQA1.1	5.0e-11	Protein GRAIN NUMBER PLANT HEIGHT AND HEADING DATE 7
trEMBL	A0A5P1F5C7	1.3e-19	CCT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15850.1	70.21	3e-14	75.9	ATCOL1;BBX2;COL1	CONSTANS-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00860	AT5G57660.1	43	10	191	233	284	326	76.74	3e-14	75.9
AfisC5G00860	AT5G15850.1	47	14	191	237	285	331	70.21	3e-14	75.9
AfisC5G00860	AT2G24790.1	46	13	191	236	228	273	71.74	4e-14	75.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	192	234	58.1	6e-16

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0042802	F	identical protein binding
GO:0009658	P	chloroplast organization
GO:0009909	P	regulation of flower development
GO:0010018	P	far-red light signaling pathway
GO:0010099	P	regulation of photomorphogenesis
GO:0010161	P	red light signaling pathway
GO:0010229	P	inflorescence development
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0048576	P	positive regulation of short-day photoperiodism, flowering
GO:0048579	P	negative regulation of long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network