Detail information of AfisC5G00881


Location
GeneChrStartEndStrand
AfisC5G00881chr5165821978165830746+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020263178.15.4e-169PHD finger protein EHD3-like
SwissprotQ6ZJM9.16.3e-82Proetin EARLY HEADING 3
trEMBLA0A5P1E1862.2e-116PHD-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G77250.133.875e-61 233RING/FYVE/PHD-type zinc finger family protein

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Ortholog group
SpeciesGenes
Allium cepag416681.t1
Allium fistulosumAfisC5G00881
Allium sativumAsa6G06346.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02892.12zf-BEDDomain6710932.08.2e-08
PF02892.12zf-BEDDomain20123522.00.00011
PF00628.26PHDDomain61766833.13.5e-08
PF00628.26PHDDomain80685141.76.9e-11

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003714Ftranscription corepressor activity
GO:0005737Ccytoplasm
GO:0016491Foxidoreductase activity
GO:0007338Psingle fertilization
GO:0007526Plarval somatic muscle development
GO:0010628Ppositive regulation of gene expression
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0030717Pkaryosome formation
GO:0033601Ppositive regulation of mammary gland epithelial cell proliferation
GO:0034647Fhistone demethylase activity (H3-trimethyl-K4 specific)
GO:0034648Fhistone demethylase activity (H3-dimethyl-K4 specific)
GO:0034721Phistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0036098Pmale germ-line stem cell population maintenance
GO:0043970Phistone H3-K9 acetylation
GO:0043992Fhistone acetyltransferase activity (H3-K9 specific)
GO:0045475Plocomotor rhythm
GO:0046425Pregulation of JAK-STAT cascade
GO:0060444Pbranching involved in mammary gland duct morphogenesis
GO:0060763Pmammary duct terminal end bud growth
GO:0061038Puterus morphogenesis
GO:0070193Psynaptonemal complex organization
GO:0070822CSin3-type complex
GO:2000737Pnegative regulation of stem cell differentiation
GO:2000864Pregulation of estradiol secretion

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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